AMCG00003909


Basic Information

Item Value
gene id AMCG00003909
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24263907 ~ 24296246 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003909
ATGCCAGTCATCCTGGAGAGACAGAAACCGGACCAATCACAGCAGCCCCTGAAAGGACACCATCATGCCCTGAGCCATTCTCCACATACAGAGCCCTGCACTACTGAAGCCACGCAGCATGGCCGCGGACACGCCTCCAGCCCGCTGCTCATTCCTCGCTCCTCGCCGCCGGGACAGCAGCACCGCACCGCCGCCGCCGCTCCATCACTCTCCCGGACCATGAGGCTGTCCGCAGTGCTGCGCAGTGCGAGCCGGAGCTTCCCCTCCGCCGCGGTGAGCCGGCCCCGGTTCGGGCTGCGGGCCCTGCGGTCTGAGGGCGGCTCTGCGGGGCCGGGCGGCTGCAGTGTGCGAGAGGCCAGCTCGGGCAGCGGGACCGGAGCAGCGGGGCCGGCGATGCTGTTCGGGAAACGCCGGGACCACAATGGCAGCCCCGGGCATGAGGCTGCCTTCAGGGAAATAATCCAGAAGTCCAAAGAAGAGATAACATCATTACAGAAGCACCACCCTTCGTTCAAGCCTGTCCTTGCCATCATAGAGGCAGGTGAAGATGACAGTTTACTTGAAATGAACAAGGACATTGCTGCTAAGATTATAGATGAAATCCTTAAGCTGAATGAAGACCCTAAGGTCCATGGCTTAGTTCTGCATCTGCCGCCAGCTTCTCATTACAGCAAAGTACTGAACACCGTGAAACTGGAGAAGGATGTCGATGGGGTGACAGATCTGAACGTGGGAAGGCTTGTCCGTGGGAATGTGAATGAGTGCTTTGTTCCTCCTGTAGCCAGTGCAGTAATTGAACTACTTGGAAGACATGAGGCATCGCTGGAAGGAAAGACTGTGCTGATAGTGGGGGAGAGTGGGCCGCTTGAGGTTGCCCTGCAGTGTCTGATTCAGAGGAAGGGTGGAGTGGTGCTGAGTCCTGGGTGGAAAGCTGACATCCCACAGAAACAG
>TU5210
AGCACCGCACCGCCGCCGCCGCTCCATCACTCTCCCGGACCATGAGGCTGTCCGCAGTGCTGCGCAGTGCGAGCCGGAGCTTCCCCTCCGCCGCGGTGAGCCGGCCCCGGTTCGGGCTGCGGGCCCTGCGGTCTGAGGGCGGCTCTGCGGGGCCGGGCGGCTGCAGTGTGCGAGAGGCCAGCTCGGGCAGCGGGACCGGAGCAGCGGGGCCGGCGATGCTGTTCGGGAAACGCCGGGACCACAATGGCAGCCCCGGGCATGAGGCTGCCTTCAGGGAAATAATCCAGAAGTCCAAAGAAGAGATAACATCATTACAGAAGCACCACCCTTCGTTCAAGCCTGTCCTTGCCATCATAGAGGCAGGTGAAGATGACAGTTTACTTGAAATGAACAAGGACATTGCTGCTAAGATTGGATTAAATGTCATTCATATCTGCTTGCCAGTGGAGTGCACTGAAGATGAGATTATAGATGAAATCCTTAAGCTGAATGAAGACCCTAAGGTCCATGGCTTAGTTCTGCATCTGCCGCCAGCTTCTCATTACAGCAAAGTACTGAACACCGTGAAACTGGAGAAGGATGTCGATGGGGTGACAGATCTGAACGTGGGAAGGCTTGTCCGTGGGAATGTGAATGAGTGCTTTGTTCCTCCTGTAGCCAGTGCAGTAATTGAACTACTTGGAAGACATGAGGCATCGCTGGAAGGAAAGACTGTGCTGATAGTGGGGGAGAGTGGGCCGCTTGAGGTTGCCCTGCAGTGTCTGATTCAGAGGAAGGGTGGAGTGGTGCTGAGTCCTGGGTGGAAAGCTGACATCCCACAGAAACAGGT
>TU5211
AGCACCGCACCGCCGCCGCCGCTCCATCACTCTCCCGGACCATGAGGCTGTCCGCAGTGCTGCGCAGTGCGAGCCGGAGCTTCCCCTCCGCCGCGGTGAGCCGGCCCCGGTTCGGGCTGCGGGCCCTGCGGTCTGAGGGCGGCTCTGCGGGGCCGGGCGGCTGCAGTGTGCGAGAGGCCAGCTCGGGCAGCGGGACCGGAGCAGCGGGGCCGGCGATGCTGTTCGGGAAACGCCGGGACCACAATGGCAGCCCCGGGCATGAGGCTGCCTTCAGGGAAATAATCCAGAAGTCCAAAGAAGAGATAACATCATTACAGAAGCACCACCCTTCGTTCAAGCCTGTCCTTGCCATCATAGAGGCAGGTGAAGATGACAGTTTACTTGAAATGAACAAGGACATTGCTGCTAAGATTGGATTAAATGTCATTCATATCTGCTTGCCAGTGGAGTGCACTGAAGATGAGATTATAGATGAAATCCTTAAGCTGAATGAAGACCCTAAGGTCCATGGCTTAGTTCTGCATCTGCCGCCAGCTTCTCATTACAGCAAAGTACTGAACACCGTGAAACTGGAGAAGGATGTCGATGGGGTGACAGATCTGAACGTGGGAAGGCTTGTCCGTGGGAATGTGAATGAGTGCTTTGTTCCTCCTGTAGCCAGTGCAGTAATTGAACTACTTGGAAGACATGAGGCATCGCTGGAAGGAAAGACTGTGCTGATAGTGGGGGAGAGTGGGCCGCTTGAGGTTGCCCTGCAGTGTCTGATTCAGAGGAAGGGTGGAGTGGTGCTGAGTCCTGGGTGGAAAGCTGACATCCCACAGAAACAGctccagcagg

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003909 True 951 mRNA 0.58 7 24288133 24296246
TU5210 False 829 TUCP 0.38 7 24288131 24295776
TU5211 False 837 TUCP 0.51 8 24263907 24295776

Neighbor

gene id symbol gene type direction distance location
AMCG00003907 NA coding downstream 72565 24145943 ~ 24191342 (-)
AMCG00003905 NA coding downstream 160786 24099012 ~ 24103121 (-)
AMCG00003904 NA coding downstream 166824 24082665 ~ 24097083 (-)
AMCG00003906 NA coding downstream 188624 24047154 ~ 24075283 (-)
AMCG00003901 NA coding downstream 410967 23847021 ~ 23852940 (-)
AMCG00003916 NA coding upstream 360231 24656477 ~ 24683766 (-)
AMCG00003919 fbxo30,LOC108239090,LOC103144688,LOC102226384 coding upstream 390967 24687213 ~ 24695742 (-)
AMCG00003921 LOC105418861 coding upstream 400825 24697071 ~ 24708960 (-)
AMCG00003920 NA coding upstream 416983 24713229 ~ 24744190 (-)
AMCG00003927 NA coding upstream 1257292 25553538 ~ 25558348 (-)
G4256 NA non-coding downstream 133941 24128541 ~ 24129966 (-)
G4255 NA non-coding downstream 138855 24124851 ~ 24125052 (-)
G4222 NA non-coding downstream 217765 24043668 ~ 24046142 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding downstream 441209 23820690 ~ 23822698 (-)
G4130 NA non-coding downstream 709383 23554276 ~ 23554524 (-)
G4353 NA non-coding upstream 339044 24635290 ~ 24635495 (-)
G4390 NA non-coding upstream 524595 24820841 ~ 24881609 (-)
G4397 NA non-coding upstream 572465 24868711 ~ 24873886 (-)
G4415 NA non-coding upstream 767308 25063554 ~ 25068242 (-)
G4455 NA non-coding upstream 1170006 25466252 ~ 25467433 (-)
AMCG00003896 tmem181 other downstream 506111 23740585 ~ 23757796 (-)
AMCG00003893 NA other downstream 730025 23529519 ~ 23533882 (-)
G3523 NA other downstream 4757154 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 4838541 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 4890682 19361818 ~ 19373225 (-)
G4521 fig4 other upstream 1601688 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 1669174 25965420 ~ 25998628 (-)
AMCG00003967 LOC107095448 other upstream 2534108 26830354 ~ 26869578 (-)
AMCG00004006 NA other upstream 5028495 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 5888372 30184618 ~ 30220135 (-)

Expression


Co-expression Network