AMCG00003929 (cdc40)


Basic Information

Item Value
gene id AMCG00003929
gene name cdc40
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25660330 ~ 25696539 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003929
GCGGCCGGATATTTACACCAAATTCAAGATGTCGGCCACTATCTCAGCCCTCGTTTCTTACGGTACCGATTCTGGTTCAGATTCTGATGGCGATACTAAAGTCAGCCCCGACAAAAACGACCCAGATGCTACTGCACACCTTCGGCCATTGGTTTCTGTGCAGAAAACCTCATTAGCGAGCCTTAATTCAGCTCCGGAGGTCGCTGTAAAGGAAGATGTGGAAACCGGATCTCATCTGGACCCTTCACTCAAGGAGGTCACGTTTAACCCAACATATGAGACTATGTTTGCTCCAGAGTTTGGCCCTGTGAACCCATTTAAAACCCAGCAGATGTCTGCCCCACGAAACATGCTTTCCGGCTACGCAGAGCCCGCCCACGTCAACGACTTCATGTTTGAGCAGCAAAGGAGGACTTTCTCCACCTTCGGATATGCTCTGGATCCCTCCGTGGACAACAGTCAACTTTCATCCAGCAGTTTTATTGGCGCAGTGGAGGAGGCTGAGAAGAACAAAGgaTTAACAGTTTTTGAGGCAGGGgccaagaaaacagaaaaaaggaaaaaagtcaaAGGAACGGACGCTTCTGACATTGATGGCTTCCTGGGACCCTGGGCGAAATATGTGGATGAAAAAGATGTGGCTAAACCCTCAGAAGAAGAACAGAAGGAGCTGGATGAGATCACTGCCAAGAGACAGAAGAAAGGCAAACATGAGGAAGAGGCACCGGCAGACGAGAAGACAATTCTTCACGTCAAGGATGCATATGACTACCAGGGCAGGTCATATTTGCACATTCCTCAGGATGTGGGCATCAATCTGCGCACGGCTGACATTCCTGACAAGTGCTACCTGCCCAAAAAACAGATTCACGTCTGGTCTGGACATACAAAGGGTGTCAGTGCCATCAGGCTGTTTCCTCTGTCTGGTCATCTGTTGCTGTCCAGTTCAATGGACTGCAAGATCAAGttgTGGGAAGTTTACAACGAAAGGAGGTGTTTACGAACATTTATTGGTCATAGCAAAGCTGTTCGAGACATCTGTTACAATAACAACGGATCTCAGTTCCTCAGTGCAGCATATGACCGGTATCTCAAGCTCTGGGACACGGAAACAGggcaatgcatttcaagattCACAAACCGGAAAGTCCCATACTGTGTCAAATTTAATCCCGATGAAGACAAGCAAAACCTCTTTGTGGCTGGAATGTCTGATAAGAAAATAGTGCAGTGGGACATCCGGTCAGGGGAAGTTGTTCAGGAATACGATAGGCATCTCGGGGCTGTCAACACCATCACTTTTGTGGATGAGAACAGACGCTTTGTGAGTACCTCAGATGACAAGAGCCTCCGAGTCTGGGAATGGGACATTCCTGTTGACTTCAAGTACATCGCAGAGCCAAGTATGCATTCGATGCCTGCTGTGACTTTGTCTCCAAATGGGAAGTGGCTGGCCTGTCAGTCTATGGACAACCAGATCCTCATCTTTGGAGCCCAGAACAGATTCAGACTGAACAAGAAGAAGATCTTCAAGGGACACATGGTGGCCGGCTATGCCTGTCAAGTGGATTTTTCACCCGATATGAGCTATGTGGTTTCAGGAGATGCTGATGGGAAATTGAATATTTGGGActggaaaacaacaaagctGTATCACCGGATCAAGGCCCATGACAAAGTGTGCATCAGCGCACTGTGGCATCCTCATGAGACCTCCAAGGTCATCACGTGTGGCTGGGACGGCCAGATCAAGCTCTGGGACTAGTGAGGCCACAGTGCCAACAGCTCACACACCTGGCATGAGGGGAAGAGTAACTTCCTTTTTTGATTTCCCATTGATTTTTAATATGGCCCCCATAAACCTCCAGCAATGCTTGTAGGGCTGGCATCCAGTCCAACGGTGGGAGTgttcgtttttattttctttggtaTTGTGGTTCCAGGAACGGACGCTGGCAGTGCTGGGGACGGAGCAATTAATCAGACTGCTGTGCTTGCcaatacctttttatttttattacagatgtttgaaataaacaattttgTCATAACCCCTTAACTACCAAAGTTCTCACTGAATTGAATGGGTAggtttttcatttgatgtaaAACTCAATTTTCAGCTCTTTAGCAATGTCTGCAGACTCCTGTCATAATAAACTTTCATATGTTTCTAGTAAGCCTCTTTTGGAATAATTTGGACTCTATATATAGTCTGAGTGTGTATAACATAGAAGGTAATAACTGATGCTATAGGACTCTGAACTCTGAATAGAAAAAATCTATTCACAATTTTCAGTTGCAAAGCAGGTTCATATTTatgattgttttcttccttcttgAGGTTCC

Function

symbol description
cdc40 Predicted to act upstream of or within cell division and mRNA splicing, via spliceosome. Predicted to be part of catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human CDC40 (cell division cycle 40).

NR:

description
PREDICTED: pre-mRNA-processing factor 17

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG:

id description
K12816 CDC40, PRP17; pre-mRNA-processing factor 17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003929 True 2349 mRNA 0.46 15 25660330 25696539

Neighbor

gene id symbol gene type direction distance location
AMCG00003928 NA coding downstream 68843 25580771 ~ 25591487 (-)
AMCG00003927 NA coding downstream 101982 25553538 ~ 25558348 (-)
AMCG00003920 NA coding downstream 916140 24713229 ~ 24744190 (-)
AMCG00003921 LOC105418861 coding downstream 951370 24697071 ~ 24708960 (-)
AMCG00003919 fbxo30,LOC108239090,LOC103144688,LOC102226384 coding downstream 964588 24687213 ~ 24695742 (-)
AMCG00003942 LOC101067178 coding upstream 114781 25811320 ~ 25818975 (-)
AMCG00003940 fig4 coding upstream 151622 25848161 ~ 25851389 (-)
AMCG00003941 fig4 coding upstream 177608 25874147 ~ 25884138 (-)
AMCG00003945 NA coding upstream 310311 26006850 ~ 26015600 (-)
AMCG00003952 NA coding upstream 390208 26086747 ~ 26117524 (-)
G4455 NA non-coding downstream 192897 25466252 ~ 25467433 (-)
G4415 NA non-coding downstream 592088 25063554 ~ 25068242 (-)
G4390 NA non-coding downstream 778721 24820841 ~ 24881609 (-)
G4397 NA non-coding downstream 786444 24868711 ~ 24873886 (-)
G4353 NA non-coding downstream 1024835 24635290 ~ 24635495 (-)
G4602 NA non-coding upstream 580905 26277444 ~ 26279767 (-)
G4624 sec63,LOC106940628 non-coding upstream 663318 26359857 ~ 26365069 (-)
G4660 NA non-coding upstream 837341 26533880 ~ 26586892 (-)
G4665 NA non-coding upstream 862330 26558869 ~ 26561251 (-)
G4727 NA non-coding upstream 1061812 26758351 ~ 26758880 (-)
AMCG00003909 NA other downstream 1364084 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 1902534 23740585 ~ 23757796 (-)
AMCG00003893 NA other downstream 2126448 23529519 ~ 23533882 (-)
G3523 NA other downstream 6153577 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 6234964 19424963 ~ 19425366 (-)
G4521 fig4 other upstream 201395 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 268881 25965420 ~ 25998628 (-)
AMCG00003967 LOC107095448 other upstream 1133815 26830354 ~ 26869578 (-)
AMCG00004006 NA other upstream 3628202 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 4488079 30184618 ~ 30220135 (-)

Expression


Co-expression Network