AMCG00003939


Basic Information

Item Value
gene id AMCG00003939
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25904385 ~ 25915025 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003939
ATGCCCGTCTTTGTCGACAGCCTTATTGAAGACGACTCCGAAAGAGATTTTCTACTGTCTAAACccacttgttttttaattattggaaAACCTGTGAGTGGACAACAACTTCTGTGCTGCTCTCACTTGTTCAACAGCCTTGCACTAATATATGGAAATTACGTATTTACTCAAGTGTTGTCAACCCAGAAAGATACCCTTTTATCagatattgattttgttatagATCTGTACTTTCTCAGCAAGTTTGGTGgcaagtATACTGAATTGATCAATCACCATATTACAACACAGACAGAACATGGACTGAAAtTCCTGGAGATTCTTAATGAAGGGAAAAGCATTCCTGAAGAGATGATGACCAAGCTTATTCTAGAAAAGCTCAACTCACCTGAGGTGGAACATTATGGTTATGTTCTAAGCAGCCTCCCCTCGATGTCAGAAGACTACCTGAAGATTCCAGAACAGATAGAAATGATAAGAAATCTTAAACTTTCCCCAGATTTTATCATTAACATCAAGTGTGCAGACTACGACCTGAGTCATCGGCTTTCTGGACAAAGGCAAAATCCAGAGACAGGGAAAGTATATCAAAAGGAACAGTGGGACCCTGTGAGAAAAgaagtaaagaaaagaaaaagagattatcagggggaggaggaggaggaggaggaggaagaagaacaCTTGGAGGAAGCTGATGAAGAAgaagaggaagaagagctTGAGAAGGACATGTATTCACAACTGGTGAGGCAGCCTGAAGACTTCCCAGAAAGAGCCATAGAAAGAATCGTGCTTTACAAAGACACAATGCTTCGATCTTTAGAGGATTACATGGCTGACCATGATCCACTCTATCTGTTTGAGCTTGATGGAAACAAGAGCTCTACTGACCTGTATTTGTCGGTGATGTCCCGTTTGGAGTCCATGGCGGTGAGGAGCGCCGCGGTACCAATCAGACTGCTGCCACCTGACGACGAGGACGTGCCAGAGGAGATTGACAATGAAGAACTGCTGCGGACCTTGTCAGGGTATAAGATGGTGACTCCTGGGTACAGGTGGAGGAGGAGTCGCTGGGGCCGCACCTGTCCTGTAGCTCTGAAACAAGGTGACATCATCCAGGGAAAGCATGAGTTCTCCATCGGGTTCCTGGATAAAATGTACATCCTTTCAAGCCAGGAAGCTTTACAGAAATTCATGCTGAACCCACGGCCATACCTCCTCCCCCCAATGCCCAGACCCCCCTGCAAAGTAGCACTGATCGGACCCCCATCATCAGGAAAAACAACTCTCTGCAGATTGCTTGCAGAAAAGTACAACGCAAAGGTGGTGGACATGGAGGTAGCTATCCAGCCTGTGATTGCTGAAGAGCGACAGAGTCTGCTGCATAAAGCACGGGAAGAGGCCCTGGCGTCTGCGATAACCGAAGTTCAGATGAAGCTACAACAAGAACACCTTAAAAAAGCAGCTGCAAGTGAAAGCTGTGCTAAGGCAGCCTTGGACAAGGAGCAGGAGTCTGAGTCTGAGCACGACCTGGCAGCGTCCCCTACAGACGAGAGCCAGGAACCAGCCAAGATAGACAGTGTATCATTTCCAGATGAAGAAGTGGAAGAGTCTGCTGATCACAAGTCTGAGGAACAGGCAGAAACAGCTGCATCTTCTTTGAGCGAAAAGAGTACAGATGAAGTGCCGGAAGTGACAGCTGACCACCCCGAGGTCCAAGCTCTCCTTTTGGAGGCTGTTAAGAAAGCAGAGCAGCTCCCCATCACACTCTCCCCAGATGTGTATGCCGATACACTGGAGAAGCATATCAGTCAGATAGGTACCGATACAGAGGATCTAGCTGGAAAGGGGTGGGTGCTGGATAACTTCCCAAGAAACAGAGATCAGCTGACATCCATGCAGGAAAGGGAAATCATGCCAGATACATTCATCTGCTTGAGAGACAATGAAGAGGATGGAAAATACCTCTTGACTAGAATTTATGAACTCCACAAAGATGAAATTAACTCTGCCATAATGGAAAGACTGGAAGAAGAGGAACGACTTAAAGCCCTTGAAGCACAGGAGGCATTGTGCGTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003939 True 2088 mRNA 0.46 16 25904385 25915025

Neighbor

gene id symbol gene type direction distance location
AMCG00003931 wasf1,LOC106571806,LOC107739187 coding upstream 136597 25763983 ~ 25767788 (+)
AMCG00003933 wasf1,LOC106607981 coding upstream 156944 25735715 ~ 25747441 (+)
AMCG00003934 NA coding upstream 259084 25632524 ~ 25645301 (+)
AMCG00003935 ust,LOC106607986 coding upstream 355763 25518913 ~ 25548622 (+)
AMCG00003932 NA coding upstream 444434 25425817 ~ 25459951 (+)
AMCG00003938 NA coding downstream 395 25915420 ~ 25927139 (+)
AMCG00003937 NA coding downstream 18002 25933027 ~ 25938329 (+)
AMCG00003943 NA coding downstream 24857 25939882 ~ 25943047 (+)
AMCG00003944 NA coding downstream 31618 25946643 ~ 25965249 (+)
AMCG00003947 NA coding downstream 104519 26019544 ~ 26019825 (+)
G4512 fig4b,fig4 non-coding upstream 16072 25814291 ~ 25888313 (+)
G4482 NA non-coding upstream 294089 25610078 ~ 25610296 (+)
G4452 NA non-coding upstream 350296 25481598 ~ 25554089 (+)
G4362 NA non-coding upstream 1217248 24685016 ~ 24687137 (+)
G4359 epm2a non-coding upstream 1240202 24663939 ~ 24664183 (+)
G4526 NA non-coding downstream 14442 25929467 ~ 25929680 (+)
G4536 NA non-coding downstream 29118 25944143 ~ 25944352 (+)
G4589 NA non-coding downstream 310468 26225493 ~ 26227500 (+)
G4590 NA non-coding downstream 313903 26228928 ~ 26229252 (+)
G4592 NA non-coding downstream 328637 26243662 ~ 26244054 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 108590 25785173 ~ 25795795 (+)
G4360 NA other upstream 1220465 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 1774493 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 1861500 23838589 ~ 24042885 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other upstream 2178241 23710029 ~ 23726144 (+)
AMCG00003948 sesn1,LOC102782344 other downstream 166258 26081283 ~ 26085122 (+)
AMCG00003962 NA other downstream 667642 26582667 ~ 26586892 (+)
G4831 NA other downstream 2147338 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 2464786 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 2539394 28454419 ~ 28465646 (+)

Expression


Co-expression Network