AMCG00003946


Basic Information

Item Value
gene id AMCG00003946
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25965420 ~ 25998628 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003946
CGCCGGGAAGTAAAACCCCGCAGCTGCCCTTCCGAACAGCGGCTTACTGCGGACACAGCCCGGCGCAACGCACAGTGTCTGCTTTATTGACAGCCATGGCAGGGGTTTACAGCATCTCCTGTACAGAGAAGCTGCAGCTGATGGAGAAGGAACTGGCCTCACAACTCTCAGCCCTGAAGACGGAGATCGAGGAAAATGGGGTTTTGCAGGGAACACCTTCTAAGGCGTACAGAACGTTTCTGATTTGACTGCATGTCTTTGTCAGCGTGGTGCGATATTTGTGAGAAGTGGTGTGCTGGGCGTTGCAGGTGGCAGCAGCCAGGCCTGTGCTGGTCCAGGCAGATGTGATGCAGAGAGAGCTGGAGAGCTGCCTGACCCGGGAGTACAGTCCTGAGAGCCTGCCCCTGCTGCTGCACCAGTTCTATGCAGAGCGGAGCTGCCAGCTGGCACAGTGCAAATACCAATACATGCTCCGATGGAGAAGGTTTTGTCGACACTCCAGTGTCATTGAGCAGCTATATCCTCAATACAAGGAACAGGTTGGCCTGCTGATGGGAGAGTATGAGGACTCAGTGCAGAGGGCAGGCAGGCTGGCCGTGTCCAGGGAGAAGGTGCTGACGGGCAAGGGCAATCCCATGAATGCGGTGAACCAGGAAGACATGGTCATCTATCTGCAGTGGCTGGTGTGTCACCTCCACTCTGTTAAGACCATTCACCACTATCTCCGGGCGCTGCAGTACCTGCCTGTATTTGAGAGGATGAAAGGGGGCACACAGAGAGATGACGTTGCAGGAGACGGAAATGGCCTGAGTGACTCCACCTCCTCTTTCTCGCGGCTCTCAGTGCGGCCTGCCACGGTTCTGTCCAGACACTCCAGCTCTGCAGGAAAGTCTGCCTCAGGGTCCTCTCTTCAAGGTGGAtctcccttcatctcctccatTGGTAGTCCCACTATTGGAACAAATGCAGAAGGGCTTCTCAGCAGGACCATGGACATCCCTAAGCACAGCATGAGACTGGAGGAGTTTGACTCCCAGCTTCAGCAGCTACTCTCCCATTTCAACATCGACTACAACACCAAggatattaaaaacacagcgAATGAGTTGGAGCTATTCAGACTGGTGTCTCGTGAATTCAGGACGGTCTTCAACAAGCAAGAGACGATGAAGACCTTTCCTACATATGACGCCACGGAGTCTGCTGCGGGGCACTGGGGAAAGAAGACCCCGAGCATGGCTCTAAAGACGGAGGCCAACTGGATTCCCTTCATACGGGTAAAGCCCAAACGTGACCCTTGGCAACAAAAGCAAGCAACAAAACTAGAGCAACACAAATTTACTGATGAACTTTTAAGATTGCATTCAAAGTTTTTACAGgtGTCTGATCCAAATCGAGTCATGGAATCCCTCAAGGAACATGCAGCCAATATTTCTGACCCCCAGCCCATACGGCCCATATCTGTGACATCACATCCCGAGGGACAAAACACCAATCAAATATGGATGAGGATATACAGTGCCTCCAATCTGTTTCAGGAGCCAAACCCAGAGGAAAGCTCATCTGCAGAGGGTGACGCCTGGGACGTGGAAAAAGCCAATCTGACCAAAAGGCTGGGCTCTTCAAAGAAGAACAAAGACGGTTATAGTTACATGGATACCATGCAGCTGCTAGGACTGGATGATGGCcaagaggaaaacaataaagacCCGGTCATGACGATGGGAGCCTACCTGTCCCTCCTCTACCTGCGTCACCTAAGAATCCGAGACCTGCAACGCACATGTCTGGGGATTCTGAACTACATGCGCTCCGTGGAGAGGACCCTGACCATCGACACAGCGGGTCTGAGCCTACACGGGGGGGAACTGGGCAGCCTGGCGGAGGAGTCATGCTGGATGAGCGCAGCCAGAGGGGGCACTGGTACCCCCGGGGGCCTGGGGTCTCGTCACTATCTCCACAACACTCCTGTAGACTACAAGGTACACTGTTCCCAATTTATGGAGTTCCCGGACATTGAGAACCACAATGATTTCTACACTATTGAAGAGGACTCCATCCACACCCAGGACCAGCGGGGGCTGTATATTGTCTACGATGTGGCTCTGAAGGACCTCGGGGAGCTGGAGAAAGCTCTTCTCCTCATGGCTTCTCACTTCATTGGGAGAGACAGAGGGTTGCCTCAGTCTTTGGGGACAGACCTCCACGGCTGTGCAAAGCTGGATGTGGACCGTTTCGCAGTCTTGCTTGACCTGTGGACGTGCGAAGCTACTtttctgaaaagcaaacaaCAGCTCATTGACTGCTATTTTGAGGCTTACCAGCACGTGATAGATGCTGAGGAGAGGTTGGCCCTGGCGCAGGTTATTACAGATATCGCACACCAGCGGCCCAGGCTGGATCTGTCCGCTCGATACTTCGTCTCCTCCTACAAGCAGGAGCTTGTGTGTCTCCAGGGCCGCCAGCAGCTCCTCAGACTCATCCTGAATGCTCAGataGATGAACAACGTCAATATCTCGAGAAGATTTGGAGAGACGGCCAGAAAGGAACGGTGCGAGAATACGGACTGCCTCCGAACTACATCCCCAAGCAACTAGTGTCCATCAATAACAGCTGCCCTGCTCTGAAGAATGTGTTCCTTTTGGAGCTGCACCCATCACTCAGCTTGGCCTCTCGGGTTCACTGGGCCCTGAGCCAGGCCTACGATGAGCTCTGCCAGCAGCACCGGCCCAGCACCGTCAGTCAGAGAGTGGCCTTGGAACAGAGACTCCTGCAGCAGGCCCTGGACAAGTGGCAAACTCTGGACTCTCCTGGGGCGTCCTACAGCTCCCAGGTCCAGAAGGATttattttcaGATGTTATTTCTGAAGACCCATTCTTTGTCAGAGACATTGGCTTTTCTGTGCTGGAGTCTGCTGAtgaggaagaaaagaaacaaggcAAAGAGAGACAGGCCTTCATTGTAGATACTTTTTCAAGACTATTGGAGCTGGTCACAATCCGACATCGCTTGATGGAGTCTGCCTCAGAGACCACACAGCTGTCACAGGCTGTACAGGATGTTCGCAGGGGAGATGGGCTTTGACGAGTTCCACCTATACCTGCGGCCAGTGCAGTTTGAGTTTGCGGTCCCCAAGGAGAAGGCAGAGCCGCTGCCTCCGGTCTTCATCACGGCTCTGCTGCAGGATGACAGCAGAGTGGACAGGTACACTCCCACCAGTCTTCTCTTGGGAATCCAGGAGGTTGATCACAAACAAATTGGGAGGTTCAGTTTTCGAACAGAAGAATCCATTGCTCAGCTGATGAGCCGGTCTGGGATAGAAAACCTACAGGTTGTCCTGACTTGTCAGGTGACTCAGAAGAATGCCTTGATTGGAGCCGTGAAGCAGGCCTCTCTCTGCTATTGGGCGCAGACCACTGTGGCCCCACAAGATAAGGAGCTCCAAATGGGTCGTCCTGGCTCCAGGACAGATGGGGGCTCTACAAGTGGGCGAGACTCCAGAGTGGGTAAAGATCTGGAGAGCAAGAACTTCCCACAGAGCCTCTCCCCCAGCAGAGCAGGGCACAGACCAGGGGCTGGGACCTGGACAAGGCCTGCTGAAGCTTTTGTATCTCTTCAGTTAGAGAAGCTGGGTCCTCGCGATGAGatgttaaacatgtttataaagAAGAAGCAAGCCATGGGAACAGTCATGCAGAATCCTGAAGAAGTTGAGAAAATCAAGAGGGGGCTGATTCTGGAATACTGTCAAAAGGTTACTCTGTGCATGTCCCAGTACTCCCTGCGCGGTCAGATCGTTGAGTACTACAGCAGCCTCATAGCGCTACTGGACGATATTCCCGCCATTCGCGACACTTACTTCATGATTGGAAAGCCACACGAGAGAAAGGGGGAGCGTGACTCCGAGCGTGGCCTCCTCACAGATCCCAGGAGTTTCCAATCACGGCCCCGATGTTTACTCTCTGCGGATGGAAAGACGTTTCTCAACCTGTGGTTCCTCCCCCACTTCTCCGAGGTGTTAATTATGTTCAAATCCCTTGACAGAAAGGCCTGCAGACAAGCCCTTCACCAGACCCTGCGGATCGTGGCAGCGTTCCACGACATTGTCTGTTACCTGGTCAGCTTTGCTCGCCTTGGAAACGACTCCACCTTCTACAGCTCCAGGCAACACACGCCGCTCGTAGCCCACTGGGGGGGGACTGAAGGCATCgCTGCTGAGCTGCACGAGATCCAGAAACAGATCGACAGCCTCTGTGATCCCACCAGTCCTCTGGAGGTCGGCCGCCTGCTGCATCTGCGCCGGGATGTCATGTTCCTGCAGTTCGATGCCGCTGTCCGCCACTTGATCAGAGAAGCATTCCTCTCAGCAGGCAACACGGCAGCCTATCAGACAGTGACGGACAAAATGAGCCATGCCTTGCCAGTGCTGAGTGACTGTGTGACCGGCAGCTTGTACAGCACCCACCTCACCCTGCCTCTTCCACTGCAGCCGGATAGCATCCGAGCAGAAAGGATGTATCCATGGAGAAGTTTTCTGTCCCAATATGGGCCATTCCCATTCGCCATCTGCAGCATTCCAGCCATAGAGCACAGCATGCAGATGTGCCTCAGTGGGCTAGACGAGCACAGTCAGAACGTGGCCAACGGAGAGATCCTGGGAGTGTCTTTGCTGATGGAGGATGTCCTGCAGGGCAGCCACAACAGGATAGCTTTCAGTCTTCAGAGTTGGGAGGGTGACAAAACCTCCCAGCCAGCTGATAAAGAGCGGATTGTCAATGGGGATGAAGAACCAGGCAGAGGAGAGGCTGGGCCCGCAGCACAGGAGTCCTGGGTGGGCCCTCTGCAGGAGCCAGTGGAGATGTACACAGTGCTGCAGTCCTTCCTGGTGCTGTGGAAACAGTTGGAGAGGTTGAAGGAGGTGTGGGGACGGCAGCGACTGGGCGTCCAGCAGATCAACACCCTCTCTCTGTATAAACAGTTCTCCAGGATGTACAGTGTGGAGATCCTGTACCCAGTCATGAGAGCCATTGCCCGACAGCTGGGCAAGGAGGAGGAGTACGAGGTCCTGCAGACAGACACCCAGCCTATCCTTCCACCCTCAGGGGCTTCAGAAGTGGACATTAAAACACGACAGCTTCATAAACTGCTGGAGAGCCTTGAGAGTGAGATGATCAGTGAAGTGCAGAAGAAGATAACCAAGGAGCTGACCATGGTGATATCTGAGCGAGCACGACAGGACACCAGGCTGCCCACGGAACTATGGAAACACCCAGGAATGAAGCAGAGCTTTGCACCAGAACGACCAGAAATAGTAGAGAATTTTGTGCAGCAGCTAATGTGGAACTGCGAGGAGACTCCTGATGAGAAGGTGACGTTCTCCAAAGCCCACCTGCACTCCTGTGTGACTGCTCTGGCGTGTGCAGTGATGCAGAGGGAGCGCAGTAATTTTGACACCTACTCCATGTTCTATGAGAACATCCTGCAGCAGGAGACACAGCTGCTCTATCAGAGAGAGCAGgatcTTAAGGCCCTGGAGGAATCCCGAACACAGAGAGATGGGCCGGATGCCCAGGTGGCAGATCTCAGCCAGGAGATCATAGTGGAAATCACAGCCCTGCGAAGCCACCTGGcccagctggaggaggagagaggcgGTGTGCAGGAGCAGGTCTGCGCTCGGCTGCAGCAGGAGTACGAGGCCCTGGATGTGAGCCAGCTTGTCAGCCAGGTGAGGAGCGAGGGTGTGGAGAACATGATGAAGTTGAAGAAGAAATTTGGCTCCACCAAAGATGATGAGGCGCTACTGGCAACACTGTCAGCGCAAGAAAAACTGCAGGAGCTGCGATGGGAGAACAACCAGCTGGATGCCCTGCTTTGTAAGCTGAAGGCCCTGGGCTTCTGGAAACACAGTGCTGCGGAGAGGCAACAGAAGGAGAGTCTGGTGCAGAGGATGGTGGCCGAGGAGGAGGGCGTTCTGCTCCGGCAGCAACTGGAGGCCGCGAGGACGGCCCTGTCCCAGTGCCAGGCTGAGTACAAGAACACCAAGAGACAGCTAGAGAAACAGAGGCAGCTATTGAAGGAGGTGGAGCATCGCTCGGCCCAGGAGGCACGCAGCCGGCAGCACCTGGACAGCATGAGGTCCGCCAGCCTGGAGCAGCTGCAGATGGACGCAGAGCACAGGGAGCTGCAGTTGCGCTCACTCACCGACCAATTGGAGAGGAGCGCCAGGGTGAGAAGCCAGCTTTCCCAAGAACGCAGCCTGAAACTTGACGCCTTCCAGCGCGTCGATGAGCTGCAGAGCCTGGTGTATGACACTGAAGCCAGCCTGTCCCAGCGGAGTTCCCCCACAGGCCAGAACAAGAAGTCCACTTCTCTTTTGTCCCGCAGCACAAGCAGCATAAAGAGTACAGTGCCAGGCTCTGCGAAGTGTAATAAGCTGGCGATTCACTCGGCCTCTGCCCTGCCGAGGGAACCTGTTCAAGAATCCCCCACAGTCCAGGGCAACAGCCCTGACCCCCGTCTGCAGAGGCCCAAAACTGGCCCCAGTCGGCTGAGGAGCCAGGCTGTAGACGCTCTGTTACCTGATCTTGAAGAAGGGGGCCCTCACAGCCTGCTCACAAAGCTGCAGGAGCTCCGGCTGGGCCAGAAATAATCTCAAAGAGCGGTCTGTGTGACGCACTGTTGTAGAGCACTAGAGCCCTACTCCCTCTGGACATGATTCAGTCATTCCTCCTGTGAGCCCTTCTCTGCGAGTTTGGGGGGACTGACTACATGAGTGAAGAGGCCAAGATGCTGAAGTCCAAGTACAAGGCTACAGCTGCTGCAGTCATGTGGATGCCAGAGATTGGAGCGGTCCTACATCTGATCAAATGTTAAGATAAGCTCTGGGAGATTGCACTTTGGCTGGGGAATGTTTAGAGTCGTCAACTGCATTTGTCATTTTCAGTTTGGTGCAGGATCCcaattgtgctgtgtgtttttgtgtgtgaaattttTTAAGCTAAAAAAATCTGAGTGTTGTACCTCTTCAAACAttatcctattaaaacaaatttctCTTGTGTGAa
>TU5572
CGCCGGGAAGTAAAACCCCGCAGCTGCCCTTCCGAACAGCGGCTTACTGCGGACACAGCCCGGCGCAACGCACAGTGTCTGCTTTATTGACAGCCATGGCAGGGGTTTACAGCATCTCCTGTACAGAGAAGCTGCAGCTGATGGAGAAGGAACTGGCCTCACAACTCTCAGCCCTGAAGACGGAGATCGAGGAAAATGGGGTTTTGCAGGGAACACCTTCTAAGGCGTACAG

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003946 True 7069 mRNA 0.54 49 25965420 25998628
TU5572 False 232 lncRNA 0.37 2 25997435 25998628

Neighbor

gene id symbol gene type direction distance location
AMCG00003941 fig4 coding downstream 81282 25874147 ~ 25884138 (-)
AMCG00003940 fig4 coding downstream 114031 25848161 ~ 25851389 (-)
AMCG00003942 LOC101067178 coding downstream 146445 25811320 ~ 25818975 (-)
AMCG00003929 cdc40 coding downstream 268881 25660330 ~ 25696539 (-)
AMCG00003928 NA coding downstream 373933 25580771 ~ 25591487 (-)
AMCG00003945 NA coding upstream 8222 26006850 ~ 26015600 (-)
AMCG00003952 NA coding upstream 88119 26086747 ~ 26117524 (-)
AMCG00003951 NA coding upstream 156915 26155543 ~ 26214675 (-)
AMCG00003950 NA coding upstream 226838 26225466 ~ 26257039 (-)
AMCG00003953 nr2e1,LOC107726614,LOC107601200,LOC107726424 coding upstream 282908 26281536 ~ 26289404 (-)
G4455 NA non-coding downstream 497987 25466252 ~ 25467433 (-)
G4415 NA non-coding downstream 897178 25063554 ~ 25068242 (-)
G4390 NA non-coding downstream 1083811 24820841 ~ 24881609 (-)
G4397 NA non-coding downstream 1091534 24868711 ~ 24873886 (-)
G4353 NA non-coding downstream 1329925 24635290 ~ 24635495 (-)
G4602 NA non-coding upstream 278816 26277444 ~ 26279767 (-)
G4624 sec63,LOC106940628 non-coding upstream 361229 26359857 ~ 26365069 (-)
G4660 NA non-coding upstream 535252 26533880 ~ 26586892 (-)
G4665 NA non-coding upstream 560241 26558869 ~ 26561251 (-)
G4727 NA non-coding upstream 759723 26758351 ~ 26758880 (-)
G4521 fig4 other downstream 63808 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 1669174 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 2207624 23740585 ~ 23757796 (-)
AMCG00003893 NA other downstream 2431538 23529519 ~ 23533882 (-)
G3523 NA other downstream 6458667 19444016 ~ 19506753 (-)
AMCG00003967 LOC107095448 other upstream 831726 26830354 ~ 26869578 (-)
AMCG00004006 NA other upstream 3326113 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 4185990 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 4275178 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 4815153 30813781 ~ 30894824 (-)

Expression


Co-expression Network