AMCG00003952


Basic Information

Item Value
gene id AMCG00003952
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26086747 ~ 26117524 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003952
atgGGCTGCGCGGTGCGAGCGCTGGAGAAGCTGCGCAGCCGCAGGTGCAGACTGTGCAGACTGCGCACACGACGTAAAGCGCGCGCTGTGGAGCGCTGCGCCGGCGCGTCGTTGCCATGGCGACCGCTGCGCGCAGGACGCTGGGATCAACAGAGTGAAGTAAGAAGATTCCCAAAGCTCACAATGTCATTGGAAAAAAAGGCTGACAAAAATGAGCCCTTTTACCTGAGCCCATCACCCAGGAAGAAAACAAGTGCAGAGATCATAAACGAGGCCCGCAGGTCTCTACGAACGATCAAGACTCAAAGGCCATTCACACCCCGCAATGACCAGCGGCAGCTGTTTGGACCAAGCTCATCTCGATCAATCGAGCAACGCCCTCCTTCGGCTTTCAGTCTTCATGCCCGCAATTTTGAAGCACCTGATTCAAGGCCTGGATCAGGAAAACGACTTTCTCCCCTGGAACACaaaccCAAACTGCCAGATAAGGAGGCTGACACCTCACCCCCTCTCCCCAAACCTCCTCCAGACTCTCTAGAGCTCAAAAAAGTGAGCACCGCTCGGGCTCGCCTGTTCAGAGCCGGCTCCCTGGGGGGGCTCCCACAAGCAATGCTGCCAGAGCAATTTTTGAAGAGGCTGAATTCTGAAGCCTCTCTTGCCAAACCTGGCTCTTCAGTGGCGGTTGAGGAAACACTTTCACACACCATGTGTGGAGGCAGCAACACCCTACTGATCAAGGCCTCGAAAGCTGAAGAGAATGACATAGGAGTCTGTTCAAGAGCAAAGTGTGATGAAACTGTGCCGTCCAGACCTGGGAGTGGAAGtgatTCAACTGGAAGTTCAAGTTGTGCGTCTTCACAGTCTGGTAGTGCTGACAGCACGGGAGTCAGGAGAAGAATAGGATCTGATAACAGTGCAAGAATGGCTGAAGATGAATGTGAACAAACCATTTACTGGAATTCCAAGATCATACCTGTTCTCCAGGAGCTTGAGTCTACAAATTATGGTAATGGTGTGGAGCAGCTCTGTGACGCCTGTGACAGACTGCACCGCGCACTAGAGGAGGGCAACATGATGGGCAGGAAGTGCAGGAGAAGAGCCACTCTGTTGAAAACTCTGTTTAAATTGATTGATATGGGCTCAGACCAACTTAACCTACAGCTGGCCAAACTGATCCTGGCACTCAGTGTCACTGGAAATAATCTCCTGAATGTTTGCAaacttatatttaaaattggTAGGAGTGAGAATAATGACATCCTTTTCCAAAACAGTTCTATTATAGATAGCGTGCTGTCGGTCCTTTGTTCTGAAGATGCTCTTTCCAACAGTGAGGCCGTGCTGTATTCCATGGGAACACTCAAATTCCTCTCTGCAAACAACTCACTCCTTAGTCTTCTTCTCAACAAAGACTCAGTCAACATCCTCCTGCAGCTAGCAAAGAAACTGAATGATGCCAACAGGATAAGTAACACCCACTTTGTCATCTCGGGACACATTCTGGTTCAGCTGACTGCTGCACTGAGAAATTTGGCTGACCTTCCACAGTCCCGGCCAGGGTTCCTCTCTCCCAGGGTATTTCCAGAGCTCTGCGTGGTGTTGGAGCAACACAGCAATGACAAGGACATTTGCACCAACATTGCCAGAATATTCAGTAAACTCTCTTCTTACAATGAATGTTGTATGGCGCTGGCCAGCTGTGTAAATTGCTATCAGATATTCTTGGTCTTGCTCAGAAAACACCAGAGGAAGCAGGACTTGGTGGTTCGTGTTGTTTTCACTCTGGGGAACCTGACAGCGAAGAATAATGAGGCGCGAGAGCAGCTCTTTAAAGAAGAGGGGAGCATCGACGTGCTGCTGGGCCTACTCCACACTTATTGTGAAATGGATTTTGTGTCCAAAGCATCTAGAACGCATGGCTGTGCCAAGGAATGCAAGCAGAGTAATCAGCCCTCAGAGGTGgaggatgtcctaataaagCTGATTAGAGTGCTGGCCAATCTATCAATTCACCCCACTGTGGGAACGGCACTGTCCGCTAACCCCCAGTGTGTCGATCTGCTAGTGAAAGTGCTAGAGTACAAAGCGATTGATGAATGTGAGGAGCTGGTGATCAATGCCGCCGCAACCATCAACAATCTATCGTACTACCCGGCCAAGCACTCTGTGGTGAGAGCCAGACAGCTGCCTGTTGCCGAGTTGCTGTTAAGGCTGCTGCTGAGCAATAATATGGAGGGGATGCTGGAGGCAGCTCGTGTGTTTGGAAATCTCTCCCAGTCTAAGGAAGTGCGGGACTTCATTGTACAGAAACGCATTTACAAGTTCATGATCATGCTGCTGGATTCAAAGAACCGCGATGTGTGTTTCTCTGCCTGCGGCGTGCTGGTCAACCTCACCGTGGACAAGGCCAGGCGATCAGTGCTGAGAGAGGAAAGGGGCATCCAAAAGTTGATTGACTGTCTGAGAGTCTTTGGGCCGGTGGACTGGCAGTTGGCTAGTCTTATATGTAAGACGCTGTGGAACTACAGTGAAGAGAGCACTGCGCTGTTCTTCGAAGAGGAGGAGATACAGCCACTGCTTCAGCTTCTCTCGGTCTATTTAGATGATGTGTCAGTCCACTGGGACACAAGTGAAGATCTGAGAGAGATGCACAGGGTGTGCTGGGAGAGGGAGTTTGTGCCCGTGGCTCAGAGGCTGAGAAACAGGATTCAGGGTCAGATCTCTGTGCTGGAGCCCCTCACTGCACCATCGTAGGCCATTCACACAGGCTCTCCATTCTCTGTCCCATAACATGCGATTCATGCCATGTTATTTGTTATAATCTGGGGCTATTATGCACTTTAATGTTTGTTGTGCAATGTTACGCATTGCTCGTTCTTAGTTGTTTTTAAGATGATTATATTAGAAACAcaacaaagtttacaaaatagaggaggccattcatcTCAccttgctcgtttggtgtccattgataacttggtgatccaaggatcacatccCGTCTTGTTCTAAGGccagtgaaaatgtgaaaatcgAAATTTGTAGTAAGTGTGAAATAGTGAAGAAGTTGATTAATatatggctggtttcacagagctCTGATTAGCAGTCTAGAGCTACTCTagctaaaataacattggatagTCCATGACTAgagctaatctgggtctgtgaaataATGTGCTGTAGCAGTACATATAACCTGGGCTAAGCAGTTGTAGTAAATTTGAAATTGTTTAGATTAAATCAGATATGTAATACCCTTTCCAAACTTAATGAAGGCAGATATACTGTACGTCCCAAAGACAATACGTTAGtataacactgcactgaaaaaCCGACTTTTTACATtagttttgaaacatttaaattattttccaaactCCTAGTGAATAATGCATGTTAATCACCCTCCCCCAACAGGGCAAGAACTCCCTACTGTAAAGAGTTATTTCTAAATCAGTTATTCCAGacatttgtctttgttgttttattcagttgGATCTTGAGTTCATACAGAAGGCAAAAGATGCTTCTATTTCAGTCCCATTATTAGGATTAATTCTAGAGGGAGGAAAATTAAACCATGCCAATTTGTAATAGGAAGCATCTGTATATGAATTTTGAAAATAGTCTTCTTTGcaatccaaaaaaacaaaatgtagtctGTATGCTTTAAAACCAgtgtaaataaaccc

Function

GO: NA

KEGG:

id description
K24123 ARMC2; armadillo repeat-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003952 True 3698 mRNA 0.47 18 26086747 26117524

Neighbor

gene id symbol gene type direction distance location
AMCG00003945 NA coding downstream 71147 26006850 ~ 26015600 (-)
AMCG00003941 fig4 coding downstream 202609 25874147 ~ 25884138 (-)
AMCG00003940 fig4 coding downstream 235358 25848161 ~ 25851389 (-)
AMCG00003942 LOC101067178 coding downstream 267772 25811320 ~ 25818975 (-)
AMCG00003929 cdc40 coding downstream 390208 25660330 ~ 25696539 (-)
AMCG00003951 NA coding upstream 38019 26155543 ~ 26214675 (-)
AMCG00003950 NA coding upstream 107942 26225466 ~ 26257039 (-)
AMCG00003953 nr2e1,LOC107726614,LOC107601200,LOC107726424 coding upstream 164012 26281536 ~ 26289404 (-)
AMCG00003960 NA coding upstream 307815 26425339 ~ 26446838 (-)
AMCG00003961 NA coding upstream 458612 26576136 ~ 26581454 (-)
G4455 NA non-coding downstream 619314 25466252 ~ 25467433 (-)
G4415 NA non-coding downstream 1018505 25063554 ~ 25068242 (-)
G4390 NA non-coding downstream 1205138 24820841 ~ 24881609 (-)
G4397 NA non-coding downstream 1212861 24868711 ~ 24873886 (-)
G4353 NA non-coding downstream 1451252 24635290 ~ 24635495 (-)
G4602 NA non-coding upstream 159920 26277444 ~ 26279767 (-)
G4624 sec63,LOC106940628 non-coding upstream 242333 26359857 ~ 26365069 (-)
G4660 NA non-coding upstream 416356 26533880 ~ 26586892 (-)
G4665 NA non-coding upstream 441345 26558869 ~ 26561251 (-)
G4727 NA non-coding upstream 640827 26758351 ~ 26758880 (-)
AMCG00003946 NA other downstream 88119 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 185135 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 1790501 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 2328951 23740585 ~ 23757796 (-)
AMCG00003893 NA other downstream 2552865 23529519 ~ 23533882 (-)
AMCG00003967 LOC107095448 other upstream 712830 26830354 ~ 26869578 (-)
AMCG00004006 NA other upstream 3207217 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 4067094 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 4156282 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 4696257 30813781 ~ 30894824 (-)

Expression


Co-expression Network