AMCG00003962


Basic Information

Item Value
gene id AMCG00003962
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26582667 ~ 26586892 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003962
GAGCAGAGCGCCGCGCTGCAGTAGTTTTGGGGGCCAAAAGTAGTGACACCATGATTAAAATGACAGCTGCGTGTCTTGGAGTGGTCGTGATAGCCATATATTTATCTACACAGGTTAACTCCCAGAATGCCACAATAGCAACCAACCAGACCTACGCCACCCAGAATGTAAGTACCGTGACAACCACAGCAAACACCTACAGCAGTATGGGCTCAGGGAACTCCACCACCAACCCAAAGGGAGCAGCACACCCCCTGCAGTCCAGCACCatcgtcctcctcctccctctgaCCGTCTCTGCCTCCATCCTGCGCCTCTGCTGTTAAAACCACAATAGACAACCAAAACTCTAACATCCTGTGGTGAAGATGGAAATGGTGTCATTCAAAGAGAAATGCAGTTATAACAATGATGTCTGAGTGGGGCCGTCtgaaggaaaggaagaaaatggAAGAAACGGAACGAAGcaaccccccccgccccgccccaTATCTACCAAGAGAACATGAGGGTCACCACTTCCAGGAAATCTCAGCTCTGCcagctttttaaaactgttctcTTCCCCATCAATGAGACATTTTCATTATCAGCAACAACACATTACCAGTTAACATCAAAGTCCTCAATTTGTTGCCAGTGGAGTCAGGACATGGAGTAAGGATGTACAAACTTGGCTCGTTTTGCTGtcttgatttgtgtttgtttcaagaAAAGGATGCTGTCCATTTTGCTTTAATGTACAAAAGTCCTCTTGTTATCAGTTTTGTTTAGGCAGTTAATAAACAGCTAATTGGGAATACATTGGTACCCATTATAAACAcaatggatacatttaaatgggatatagaaatacaaaaagacCAAGCTttgactttatatatatatatatatatatataaatgtatgtgtacacacacgtgtgtgtgtgtgtgtatatatatgtgtgtgtgtgtgtgtgtgtgtgtatatatatgtgtgtgtgtgtgtgtgtgtatgtatgtacacataatgtgtgtatgtacacacatgtatgtacatataaatatacatccacatattcacacacatacagttaaaTGCAGTACAAGTATATAGATATGATTGAAACGTCAAGAATGAATGGCTAATTTCAAAGCTATGGTTAATTTACCATATTAATCTTCCTCCCTTTTCTATTTTGAACTTTATAGTAAAAAAACAGTTACACTGTACTGGATAAGATTTTGCAACAGGTCAGATGTTAAATTGGTGTGATTTAATCTTTTcccatggtttattttattttttttgtataaattgcattgtttattaataaatgtgattCTGTAATTGAGTTTGAATGATCAGGGAGTAAAAGCTGACTttaatgtaaatgaataaattattggGAAAAAACATCTTTAGTGTGTTTATTGTCATTCATGTTGCTTCTTTACCATTACAGTCTCAAAATAATGGTGAGACTTGACTGATGTGAAATTGGCATctgcaacaacacaaaataaaaatgctga
>TU5691
GCAGAGCGCCGCGCTGCAGTAGTTTTGGGGGCCAAAAGTAGTGACACCATGATTAAAATGACAGCTGCGTGTCTTGGAGTGGTCGTGATAGCCATATATTTATCTACACAGGTTAACTCCCAGAATGCCACAATAGCAACCAACCAGACCTACGCCACCCAGAATGTAAGTACCGTGACAACCACAGCAAACACCTACAGCAGTATGGGCTCAGGGAACTCCACCACCAACCCAAAGGGAGCAGCACACCCCCTGCAGTCCAGCACCatcgtcctcctcctccctctgaCCGTCTCTGCCTCCATCCTGCGCCTCTGCTGTTAAAACCACAATAGACAACCAAAACTCTAACATCCTGTGGTGAAGATGGAAATGGTGTCATTCAAAGAGAAATGCAGTTATAACAATGATGTCTGAGTGGGGCCGTCtgaaggaaaggaagaaaatggAAGAAACGGAACGAAGcaaccccccccgccccgccccaTATCTACCAAGAGAACATGAGGGTCACCACTTCCAGGAAATCTCAGCTCTGCcagctttttaaaactgttctcTTCCCCATCAATGAGACATTTTCATTATCAGCAACAACACATTACCAGTTAACATCAAAGTCCTCAATTTGTTGCCAGTGGAGTCAGGACATGGAGTAAGGATGTACAAACTTGGCTCGTTTTGCTGtcttgatttgtgtttgtttcaagaAAAGGATGCTGTCCATTTTGCTTTAATGTACAAAAGTCCTCTTGTTATCAGTTTTGTTTAGGCAGTTAATAAACAGCTAATTGGGAATACATTGGTACCCATTATAAACAcaatggatacatttaaatgggatatagaaatacaaaaagacCAAGCTttgactttatatatatatatatatatatataaatgtatgtgtacacacacgtgtgtgtgtgtgtgtatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtacacataatgtgtgtatgtacacacatgtatgtacatataaatatacatccacatattcacacacatacagttaaaTGCAGTACAAGTATATAGATATGATTGAAACGTCAAGAATGAATGGCTAATTTCAAAGCTATGGTTAATTTACCATATTAATCTTCCTCCCTTTTCTATTTTGAACTTTATAGTAAAAAAACAGTTACACTGTACTGGATAAGATTTTGCAACAGGTCAGATGTTAAATTGGTGTGATTTAATCTTTTcccatggtttattttattttttttgtataaattgcattgtttattaataaatgtgattCTGTAATTGAGTTTGAATGATCAGGGAGTAAAAGCTGACTttaatgtaaatgaataaattattggGAAAAAACATCTTTAGTGTGTTTATTGTCATTCATGTTGCTTCTTTACCATTACAGTCTCAAAATAATGGTGAGACTTGACTGATGTGAAATTGGCATctgcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003962 True 1517 mRNA 0.38 2 26582667 26586892
TU5691 False 1473 lncRNA 0.39 3 26582669 26586870

Neighbor

gene id symbol gene type direction distance location
AMCG00003963 NA coding upstream 4463 26567730 ~ 26578204 (+)
AMCG00003959 NA coding upstream 21546 26532149 ~ 26561121 (+)
AMCG00003957 scml4 coding upstream 158544 26395626 ~ 26424123 (+)
AMCG00003958 sec63 coding upstream 217568 26339848 ~ 26365099 (+)
AMCG00003955 NA coding upstream 243406 26334633 ~ 26339261 (+)
AMCG00003964 NA coding downstream 47585 26634477 ~ 26650391 (+)
AMCG00003969 NA coding downstream 134998 26721890 ~ 26754415 (+)
AMCG00003971 NA coding downstream 291810 26878702 ~ 26879865 (+)
AMCG00003977 grik2,LOC101466412,LOC102291713,LOC102207761,LOC107740554 coding downstream 793667 27380559 ~ 27382002 (+)
AMCG00003972 grik2,LOC107667969 coding downstream 843198 27430090 ~ 27449894 (+)
G4595 NA non-coding upstream 325642 26256781 ~ 26257025 (+)
G4594 NA non-coding upstream 326561 26255789 ~ 26256106 (+)
G4593 NA non-coding upstream 338030 26244247 ~ 26244637 (+)
G4592 NA non-coding upstream 338613 26243662 ~ 26244054 (+)
G4590 NA non-coding upstream 353415 26228928 ~ 26229252 (+)
G4694 NA non-coding downstream 64393 26651285 ~ 26651567 (+)
G4787 NA non-coding downstream 695112 27282004 ~ 27282241 (+)
G4804 NA non-coding downstream 996679 27583571 ~ 27584034 (+)
G4806 NA non-coding downstream 1134568 27721460 ~ 27776442 (+)
G4808 NA non-coding downstream 1190398 27777290 ~ 27777659 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 497545 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 786872 25785173 ~ 25795795 (+)
G4360 NA other upstream 1898747 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 2452775 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 2539782 23838589 ~ 24042885 (+)
G4831 NA other downstream 1475471 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 1792919 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 1867527 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 1981292 28568184 ~ 28585674 (+)
AMCG00003993 NA other downstream 2053282 28640174 ~ 28683981 (+)

Expression


Co-expression Network