AMCG00003963


Basic Information

Item Value
gene id AMCG00003963
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26567730 ~ 26578204 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003963
ATGACACAGCAGGCGAGCCGCGTCACGTCACGCGAGAGGGCACAGGCAGGAGAAACACGGCGGACAGGAGCACGACCGCGGCGCCGTGGACACTCGGGACGCCGCCCGCGATGCCAACTTTCCGGGATCCCTTCGGGTGTGGACGAAAGAAGACCATCGCACTGTGTTAAAATAGAAAGAGAAATGGAAGACCCAGCTATTGACTGCTCGACAGGCTGCAATATAACTGAAAGCAACAGAGGGAGGGTGCTAATCAGCAGTGTGGAGGCTAGCAGCAAACGCACCAACACACAGATTGTTGCAGACAGTCCAGGCAATGAACAGGACCAGCCCACCGACATAAAAAGAGTGAAAGTGTCAGCAGAGgGAGGTAAAACCGCTGAGCAGCCACAGGACGTTCAGAGAAACGCAGGCAACACGAGCAGATCGAGGCTTTCGAGTGTGATGTCATCCAATGAGAACAAAGACCCTTCTAATGAGAAGACAATAGCCTCTTACAGGAAGCCGCTGTACAGCATTTCACACAAGatcacagaaaagaaaaccactCTGGGTCTCGATCAGCACTCTCTGCACGAAGCCGGGGACAGACTGAACTACAACAGCCTCTTATTTCCCAAAAGCCTCGGGGAGCTGGGCAGGAGGGAGGCCAACACAGCGATGGCCACCACAGCTGCAGAGAGCGACTCCAACATTTACTCTCTGATTGAAAAGATGTTTTTCATCCTCAACACGCTGAACTCCAGCATGACGCAGCTTCACAGCAAAGTGGACTTGCTCTCCCTGGAGGTCACTCGCATTAAGAAGCGCATCAGTCCCACCGAGCTGGTCGCAGAGTTCCAGCCTCCTCCCGAGTATCAGCTGAACACGGAAGAGCTGAAGCAAATCCTGGACCAGACCTCTGCGCCGGGCGAACTGGCCTGCAGGCTGCTTGTCCAACTCTTCCCCGAGCTTTTCACAGTGGAGGACATCAACACGAACTGCAACGCCTGTGAGATTGTGAGCAAGAAGAAACTGGACTCTCTTCACTTGCAACTCATTCGCAATTACGTGGAAGTCTGCTACCCTTTAGTCAAGAATGGCAGTTCTTGGCAGGTGGAGTGCCTGCCCCAAATCAATGACTTTTTTAACCGGTTCTGGGCGCAGAAGGACATGGAGAGTGGGCAGGTGGGGAAAAAAGGGACTCCATTGGCACATGGGTATGAGCCAGATCAGACACCGAGCTGCCACTACATTGATGACGAGGGGCAGGATGAGAGCCTGTCGTTGGAGTCCAGCAACAACAACGCCGTCCCTGACCTGGTGTTAGACGCTCAGGACATTGTTGAGTATCTTGACGATGTGTCTTCCCCTGGAGATTTTGCCGTGTTCTTAATGCATCGCCTTTTCCCCGAAGTCTTCGAGCAAGGCAAGAGCAGCGAAGGCTACAGCTGCTACGGCGGGATGGGGAAGCAGATCCTCGACTCGGAGAGGCTAGAGATAATCCGGAAGTACATGGAGGCCTACTTCCCTGACTTCCAGGAAGAGAGCTGGCTTCAGCTGTGTGTTCAGAGAATGGAAGAGGAGCTGGAAAATGTGCACGGTAACGGCAGTGAGTCTGAAAACGCCAGGGATGAAAGCTATGACTCGGCCAGCCTCCCCGACGACGTGTCTGTTGTAAAAATCGGGGATTTCTGTGACTTTGAGAAACCTGGGCGCAGGTCGAAAAAAATTTGGTTGGTGCCCATCGACTTCGATAAAATTGAAATCCCAGTTCTGGATTTTGAGGTCCCTCCGGAGTATTTGCTTACAAAAGAACAACTCAAGAATAACTACGAGTGCAGTTTGTCTATCGGAAACTTCGCCTCGCGCTTGTTGGTTCTGATGTTTCCTGAGCTCTTTACTTACGAGAACCTGAGGAAACACTACAACTGCAGTGGCTCTCTGGGCAAGAAGCAACTGGATCCCATGCGTATTAAACTGATTAGACATTACGTGCAGCTCCTTTACCCGCGGGCCAAGAACGACAGGGTTTGGACCTTGGAGTTTGTGGGCAAACTGGATGAAAGATGCCGGCGCAGAGACACTGAGCAGCGGCGCTCCTATCAGCAGCAGCGTAAGGTGTACATTCCTGAATCCGAACAGCGAGATTTTGTCACCTGCCCGTTGAACCCAGAGCGACTTCGCGAAGAATTTGAGATCCCTCCATTGCCCCCGGAAAGGAGCTCGAAAGACTTCTGTAAGATCCCTCTAGAGGAGCTGGCCGTACCCTCTCCTGATTTCCCCGTGCCTTCGGTTTACCTGCTCTCAGATTCGGAGATCAGAGAAATCGTTCAGCAGAGTCTCTCGGTTGGGAATTTCGCAGCTCGTCTTCTAGTCAGACTGTTCCCAGAGCTGTTCACTCAAGAGAACCTCAGACTCCAATACAACCACTCTGGTGCCTGTAACAAGAAACAGCTGGACCCAATCCGATTGAGGCTGATCCGCCACTATGTGGAGGCCGTGTACCCGGTGGACAAGATGGAGGAGGTCTGGCATTACGAGTGCATACCCAGCATCGACGAGAGGTGCAGGAGGCCTAATCGGAAAAAGTGTGACATTCTCAAGAAAGCTAAGAGAGCCAATACTGTCCTTGTAGTCCTTGGGCAGCCCATCGTCGTCCTGAAGCTCTTCCTCATGGTCACTGTTCTCTGGGTCATcgtccacctcctcctcctcatcgtGCTGAGTCTTTTTCCCTCGCATTTTGGAGCTCTTGCTGCCTTTGAACCTCACTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003963 True 2757 mRNA 0.53 4 26567730 26578204

Neighbor

gene id symbol gene type direction distance location
AMCG00003959 NA coding upstream 6609 26532149 ~ 26561121 (+)
AMCG00003957 scml4 coding upstream 143607 26395626 ~ 26424123 (+)
AMCG00003958 sec63 coding upstream 202631 26339848 ~ 26365099 (+)
AMCG00003955 NA coding upstream 228469 26334633 ~ 26339261 (+)
AMCG00003956 NA coding upstream 239703 26319767 ~ 26328027 (+)
AMCG00003964 NA coding downstream 56273 26634477 ~ 26650391 (+)
AMCG00003969 NA coding downstream 143686 26721890 ~ 26754415 (+)
AMCG00003971 NA coding downstream 300498 26878702 ~ 26879865 (+)
AMCG00003977 grik2,LOC101466412,LOC102291713,LOC102207761,LOC107740554 coding downstream 802355 27380559 ~ 27382002 (+)
AMCG00003972 grik2,LOC107667969 coding downstream 851886 27430090 ~ 27449894 (+)
G4595 NA non-coding upstream 310705 26256781 ~ 26257025 (+)
G4594 NA non-coding upstream 311624 26255789 ~ 26256106 (+)
G4593 NA non-coding upstream 323093 26244247 ~ 26244637 (+)
G4592 NA non-coding upstream 323676 26243662 ~ 26244054 (+)
G4590 NA non-coding upstream 338478 26228928 ~ 26229252 (+)
G4694 NA non-coding downstream 73081 26651285 ~ 26651567 (+)
G4787 NA non-coding downstream 703800 27282004 ~ 27282241 (+)
G4804 NA non-coding downstream 1005367 27583571 ~ 27584034 (+)
G4806 NA non-coding downstream 1143256 27721460 ~ 27776442 (+)
G4808 NA non-coding downstream 1199086 27777290 ~ 27777659 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 482608 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 771935 25785173 ~ 25795795 (+)
G4360 NA other upstream 1883810 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 2437838 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 2524845 23838589 ~ 24042885 (+)
AMCG00003962 NA other downstream 4463 26582667 ~ 26586892 (+)
G4831 NA other downstream 1484159 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 1801607 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 1876215 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 1989980 28568184 ~ 28585674 (+)

Expression


Co-expression Network