AMCG00003964


Basic Information

Item Value
gene id AMCG00003964
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26634477 ~ 26650391 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003964
CTTTAGTGAAGTGCTGGTGTTTGGGTCCGATTGAACCGGGATTTTACAGAAGTGAACTCTGTTACTGGCAGTTTGGACTAGAGGGGTTCTAGTGATAATTACAACAGAAAAGGTGTCAGAGGAACAGGAAGAAGTAGTCTcaatcttaatttatttaagcaCTTTCAGTTTAAcgttaaattgaaataaaaccttTGCAACGTGCTGCACTCATAATTGCACACAGCGTCTGTAGAGAAACCTATGCAAGGGCGTTGATGCGTGTCCATTGCAATATAACGATATAGGCTAACGCATATGCATATTTATCGTGATCTGCACAGTAAAACGTATGGTTTGATACATATTTCCAAGCAGTGGACATTTTAGCTATTGCTGTTACTGCTGTAACGTAGGAAATCATAtttgctgattataatattaaaactcACAGTGTGAAATTACCGAGTGAAGATGCTGTGTCCAATTAGAGTGGTGGCATGTAGAAAATGGGCATCTTTCTCTTATGTGAAACCCATTGGCATGACTGCGGAAGTGGGTGGAAATTTGTACGGCAGTTCATTCAACACATTCAGCACCTCTGCAAAGCGGCAGACCATTATGCCAGCGTGGGTGATCGATAAGTATGGCACCAATGAAGTACTGCGGTTTActaaaaatgcaatgtttccCATCATCAACTACCCCAATGAAGTGATTGTCAAAGTTCAGGCTGCAAGCTTGAATCCCATTGACATTACCATGAGATTGGGCTATGGTGCAGCTACAATGAACATGAGACGTGATCCGTTGAATATCAAGGCAACGGGCAGCGAGTTCCCATTAATTTTAGGGCGAGATGTCTCCGGTGTTGTTATGGAATGTGGATTAAATGTGTCATATTTCAAACCTGGAGATGAGGTGTGGGCTGCAATTCCTCCCTGGAAACAAGGCAGTTTAGCGGAGTTTGTAGTACTAAGTGGAAATGAGGTGTCGCACAAACCTAAAGCACTGAGCCACACACAGGCTGCAGCCATTCCCTACGTAGCAGCGACTGTGTGGTCTGCTGTGGTGAACACAGGAGGGCTGAATAAGGATAACTGCACTGGAAAACGGCAAGTCCCCCCACCCGTCATTTTAATAATTGGTGCTTCGGGGGGAATAGGAACATTTGCAATTCAGCTGCTGAAAGCCTGGGATTCGCATGTAACTGTGACTTGCTCCCAGAATGCCGAGCAGCTAGTGAGGGGTTTCGGAGCAGACCATGTGGTGGATTACAGAGCAGGGGATGTGGAAGCAAAGCTCAAGACCCTGGAAAAgtTTGATCTGATTCTTGACAACGtgggaggagagacagagaaatggGCACTGAGTTTCCTGAAGCCCTGGTCAGGAGCCAAATATGTCACATTGGTGACACCTTTTCTGCTCAACACAGATAGGCTGGGGGTTGCAGATGGAATGCTACAAACCGGAGTCACCATTGGCACTAAGGCGCTAAGGCATCTGTGTAAAGGAGTGCACTACCGCTGGGGGTTCTTCGCTCCCAGTGGGCCTGCTCTGGATGAAGTCAGGGAACTGGTTGATGCTGGAAAGATCCGCCCTGTCGTAGAGCAGCAGTTCTCCTTCCCAGAGGTTCCCCAGGCCTTTGAGAAAGTGGAGAAGGGCCACGCGAGGGGGAAGACTGTCATCAGCATCGCCGAGGTGTCCGAGTAGTCGCTCCTCTTCCTGCTTCCAGCTGTGCTGCTGACGTATGAAAGACTTTCCCTTTTCATAAAACTATCCAGGTTCACACTGGCACGGCTGAGAACCACTGGCTATGATCAACATGACAGATACAAACTATATGTTTATACAATCATCTTTAAGTGTGTTAAGAAACtctttattaaaacagaaatcaaactcaAACAcgtgtgcttttgttttatccCCCGAGATGCTCAGCTGCAGAAAATGGCCAGTACACAATATTCTTATCAGCAGTGGTGACATTTTGGGAGGTAAATCAATTTCAAATGCTTGACTATAATTTCCAGTAGCGTTCCAAAACAAATCTTGAAATATCTGTGAAAGGCTTGAGGAGATACTAAGACCTTCTGAGCTCTTCTGATTCTTATCAGGTTCAATTTACATCCCTAACCTGTGGTGCAATGTGTACACC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23164 RTN4IP1; reticulon-4-interacting protein 1, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003964 True 2143 mRNA 0.45 9 26634477 26650391

Neighbor

gene id symbol gene type direction distance location
AMCG00003963 NA coding upstream 56273 26567730 ~ 26578204 (+)
AMCG00003959 NA coding upstream 73356 26532149 ~ 26561121 (+)
AMCG00003957 scml4 coding upstream 210354 26395626 ~ 26424123 (+)
AMCG00003958 sec63 coding upstream 269378 26339848 ~ 26365099 (+)
AMCG00003955 NA coding upstream 295216 26334633 ~ 26339261 (+)
AMCG00003969 NA coding downstream 71499 26721890 ~ 26754415 (+)
AMCG00003971 NA coding downstream 228311 26878702 ~ 26879865 (+)
AMCG00003977 grik2,LOC101466412,LOC102291713,LOC102207761,LOC107740554 coding downstream 730168 27380559 ~ 27382002 (+)
AMCG00003972 grik2,LOC107667969 coding downstream 779699 27430090 ~ 27449894 (+)
AMCG00003973 grik2,LOC103365520,LOC107103501,LOC105917636 coding downstream 842115 27492506 ~ 27506149 (+)
G4595 NA non-coding upstream 377452 26256781 ~ 26257025 (+)
G4594 NA non-coding upstream 378371 26255789 ~ 26256106 (+)
G4593 NA non-coding upstream 389840 26244247 ~ 26244637 (+)
G4592 NA non-coding upstream 390423 26243662 ~ 26244054 (+)
G4590 NA non-coding upstream 405225 26228928 ~ 26229252 (+)
G4694 NA non-coding downstream 894 26651285 ~ 26651567 (+)
G4787 NA non-coding downstream 631613 27282004 ~ 27282241 (+)
G4804 NA non-coding downstream 933180 27583571 ~ 27584034 (+)
G4806 NA non-coding downstream 1071069 27721460 ~ 27776442 (+)
G4808 NA non-coding downstream 1126899 27777290 ~ 27777659 (+)
AMCG00003962 NA other upstream 47585 26582667 ~ 26586892 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 549355 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 838682 25785173 ~ 25795795 (+)
G4360 NA other upstream 1950557 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 2504585 24118384 ~ 24129892 (+)
G4831 NA other downstream 1411972 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 1729420 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 1804028 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 1917793 28568184 ~ 28585674 (+)
AMCG00003993 NA other downstream 1989783 28640174 ~ 28683981 (+)

Expression


Co-expression Network