AMCG00003969


Basic Information

Item Value
gene id AMCG00003969
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26721890 ~ 26754415 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003969
GATTCCTCGGCGAAGAACAGAGGTTTGTTATTAGGGACCATGTCTCGCCGCCTTACAAAAGAAGAGTTAGATGAACAGTTTGAGCAGTTCTTAAAAGAGTCTGTCTCCGATGATTCCCTTGACCTGGGTGGTACAAAACGGACAAGTGTTTTAGACAGTCTGGTGAAAGCAACAGAGACAGAAAGCAAGAATCCAGCCTCTAGGCCCTGGTGGAACAGTGATGAAGATGACAATGAGAATCCATCTGCAAGAGGAATGCTGGGAACAGGAAGGAGTTTCCTCAAATCAATGAGAAGCTCCCAGCCTATAGAAGAGGAAAATGAGGAAcaactaaaggaaaaaaaaagtgaccaaGAACCCAATCCTGTGTCTTTCACCCGAGACAGTCTAGAGCCTGAAGAGTCAGTTATGGCATCAGGACCGGGCCAGAACGGTACTGGCTTTGGAATGGACACTTTggatgaggaggaagagaaagccAGGTTTTTTGCAAACCTAGAAAGGGGAGCTTCATCTACAATTGATTACTCCAAGTTAAATAAAGATCTAGACTCAACAGACTCCACTGTTATAACTGCACTGAGAAATGGAGGATACCTGAAGACCGAAAAGGAACAGAGTCGGGATGAAATGGAGGATTCTAAGAGTGCTTCGGTGTCTCCTAATTACAGTGAAGATTTTGAAGATGAAGCCAGTGGAAAGGAAGTTCAAGATCAGaaacCAAAAGGACCTGTGATGCTAGCaaaagCTTCATATGGACAAAGTGGGGCCAGTGACATTGAAGCCTTACAAGAAGCCTACAGCAAGATTAATGATTCCCTAGGAGAGTCAATAGATCGggaacacaatacaataatgagtgaaaatctaaagaaaaaaagttcCTTGCCCCAAATGCTTGAGGATGCAACAGAAATGGAACAACATGTTACTACCACAGAATCAGACTTGCCTACAGCAGAGGAACTGATGAGGCCCATCGGATTGGAATCTGGCTTTGCTCGTGGGTTTGCATTACAGGTAGtcagTGAAAATGGACCACTGGCTGAGAGAATGGATGACTTTTCTAATAAGATGTCCTTGGTTGGGCAGCACATGGATTCAGCACATGGAGGTCAGAGAAAACAGCTGAACTGTGGTCTCCTATGTGTCAGCGGGGAAGCAGTGACAGACAGTCATAAGAGAATTGCTGATCAAGTGGAGCACTTAATGGAATATGTGGACGATTCCAAAATTAGTAGACTTCCAAAGCACTCTTCCCCTGTTCACAATAAAAGCAGAAAGCAGCAAgCATCCGAGTGGTCTCGTGAGTCATGGGGGAAGGATTCTTTTGGTCGAGAAATGGCGCCAAAACAAATGAGAAGTTATcaaacaaaaagtacaaaaaaggTTAGTGGCACCAGTCCAGCAGTCAAGACTTACGGGTTCAGCAAAGGTATTCCATCAGCAAACCACTTTTCTTCTGTCAGTGAAAAGAAGACCTTAAACCAAGATACTGATCATTCTGATGATTTTCTACAGGCCTTTCCAGGTGAAAACCCTAAGCCAGGATCTTCAGGGAATCTCCAAAGAGAAATCTCTCTTCTTAAGCGGGCAGAGGAAGCTCAAGAAAGATGCAGTGCAGAGCACAGCTTGGCAGAGAAGTTAAGAGCAGAACTAATACAGAAGGAAAAAGAACAGAAGATCAAACAAGAGGAACTTAGACTTGCACATGGCAAAGAAGTATTTCAACTGAAACAAGAAAATTACATTCTCCAGACTAAGCTGCACAGTATGGAGGAAGAAGccaaaaagaagaaattaattTTTGGAGATGCTGCTGATCCTGTGACAGAAGAAAAATTGAAACTGATAGAAAAGGATGTAAAAGAGCAAGAGGTTCTCATTCAGGGTTATCATCAGGAGAACGAAAAGCTGTATAGACAGGTAAAGGAACTGCAAGCACAAAATAAGCTGAACGAGGACAAAATGTTCCAAGAAAATCAACGTTTAATGACTGAACTAGCACTAACAAATGAACAGATGACCAGGAATACCTTGCAAAAGAATGTAGAAGAGCACAAAGAGCCGAGCAACGATCACAGTTTTTCAGAGCTTCTGGTACATCTACGTGCTGCTCAGAAGGATGAGGCAAAGTATCTGGAAGAAATACGAAGACttaaacaagacaaacaatCCCTAGAGGTAGACCTGGAACTTATGAAAAAGGAGAGGGATCTTGCAAAAGCCCAAAAGATCATGGAAGAACAATACAAGCAAGAGGTAGCTGACTTAAAAAAGAGATTGCAGTGGTATGCAGAAAACCAAGAGCTGCTTGATAAAGATGCCTTGAGACTCAAAGCAGCGTCCACGGAGattgaaaaactgaaagcacagGTGGAAAAACTCAGTGTTGAGGTAGGAAACCGAAACATTCAACAGCAAAGAAAGATGAAGGAGAGAGTGGGTGATGCAAGGAGAATACAAGACCTGGAGCGACAGGTGAAGGAAATGGAGGAGATTATCAAGAGACGACATCCAAACTCCCTTCCTGCCCTGATCTATGCAGCCGCCTCTGCAACAGCAGGTGAAGGTGGAGTCTCAACCACACCAGAGACTGCAGCCTTCCTGGAGAGACGGGTCAAGAGGCTGGAGGCTGAGCTGGAAGGCAAAGATGAAGCCGCCAAGATGAGCCTTCGAGCCATGGAGCAGCAGTATCAGAAAATAAAGATCCAATATGAACAAAGGATTTCTGATTTGGAACAACTGTTGTCCGATAAACTAATTCACGAAAGAGTTGATTCTGAGGAATGGGCTCTGAAGGCCAAGTCTTTGGAAGAGGAATTAGGCcaattaaaaaaggtttatcAAACTAAGGAAAATGTTCTCCAAAGAGAAATAGACTCCCTAGAAAAGCAGCTTCTACAGACTGAGCTGAAAGTGACTGGCAACCATAGGGAAAGTCCCCAAAGACCGGGAAAGCAAGTGGAAggggcatttaaaaaacatctgGATAAACTAAACAAGGAATTAACTGCCAAGAATAAAACCATTCAAGAGCTTTCAAAAACGGTGGAGAAGCTTCAGAGGGAGAGGAGGTCTATGCTTTCTGGGCAGACCGCAGATGGAAAAGTGTGTGAAAATAAGATGGCGTCgaacaaaagaaacaagaagGACCCCCTCCCTGCAGCCGACGTGAACACAGTGGCAGATGTGGTTCCCTTTCCTGCAACCCTGGATGAGAAGGACTACCAGCCCCATGCCTTTGCTGGTTTGCATATTTCAGAGGTACTGCAAGAAAATGAGCGACTGAAGTCAGAGCTGGAGCACTGCATGTTGGGGATGGATCGGCAGAGAGTCGAAATGCAGGCAGCAGTTGCACAGGCGGAAAGTGAAGCAAGAAGGGCTCAAGACTATGCTGCTGAGCATGTTTCATCATTAAAAGCTGAACACCAGAAGGATTTGGAGCACCTTGTTACACAGCACGCTTTGGAACACTCTTCATCTAAAGTTGCCGAACTTACAAATAAACTCTCTACACAAGAgataatGATAGAGCATTTGCGTGAGCAAGTTAATGAGCTTCATAAAAGCAAAGAAGCTCTGGCTGTTCTACATATTCGTGAAGAAACTCTGCAAAGCCAGATGGCAAAGCTGTTGGAAGAACTGAAAGAAGCCAAAGAGGCTCATAGTCCAGAACTGAAGCACTTCTCCGCTCTAGAGAGACAAATCAAGAACATGGAGATGAGACATTTGCACAGAGAGCAGGAACTCCAACAGATAATCATGCAGGGCCGTCATGTTGCCGGTGAGGAGCAGCACAGCGAAGTGGAGAAGTGGAAGAAGCTCGCCCAGTTGAAGACGCGGGAGCTTGAGGCCTTCCGGGTGGAGCTGGACTCGATACTGGATGTGCTGCGGGAGCTGCAGAGGCAAGGCGTTGTCATCCCAGCCCCCAGCAGTGCTGTGAAGAACTTTACAGAGCTCATGTGGAGGACTTGACAGTGCAGGTGCAATAGGACTTGACAGTGCAATAGTTACTTGAACCTGTTAATATCGGactgtgatttttgtatttttgggtCCAGTAATCATACTTAACCAATTATAGaaagtgtatattatatttctaGAAGGTGCCTAAGGGTGAGTGAGGATTGTTTGGTTTTTTATATGTgga

Function

GO: NA

KEGG:

id description
K16809 CEP162; centrosomal protein CEP162

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003969 True 4156 mRNA 0.44 24 26721890 26754415

Neighbor

gene id symbol gene type direction distance location
AMCG00003964 NA coding upstream 71499 26634477 ~ 26650391 (+)
AMCG00003963 NA coding upstream 143686 26567730 ~ 26578204 (+)
AMCG00003959 NA coding upstream 160769 26532149 ~ 26561121 (+)
AMCG00003957 scml4 coding upstream 297767 26395626 ~ 26424123 (+)
AMCG00003958 sec63 coding upstream 356791 26339848 ~ 26365099 (+)
AMCG00003971 NA coding downstream 124287 26878702 ~ 26879865 (+)
AMCG00003977 grik2,LOC101466412,LOC102291713,LOC102207761,LOC107740554 coding downstream 626144 27380559 ~ 27382002 (+)
AMCG00003972 grik2,LOC107667969 coding downstream 675675 27430090 ~ 27449894 (+)
AMCG00003973 grik2,LOC103365520,LOC107103501,LOC105917636 coding downstream 738091 27492506 ~ 27506149 (+)
AMCG00003980 NA coding downstream 1308140 28062555 ~ 28094602 (+)
G4694 NA non-coding upstream 70323 26651285 ~ 26651567 (+)
G4595 NA non-coding upstream 464865 26256781 ~ 26257025 (+)
G4594 NA non-coding upstream 465784 26255789 ~ 26256106 (+)
G4593 NA non-coding upstream 477253 26244247 ~ 26244637 (+)
G4592 NA non-coding upstream 477836 26243662 ~ 26244054 (+)
G4787 NA non-coding downstream 527589 27282004 ~ 27282241 (+)
G4804 NA non-coding downstream 829156 27583571 ~ 27584034 (+)
G4806 NA non-coding downstream 967045 27721460 ~ 27776442 (+)
G4808 NA non-coding downstream 1022875 27777290 ~ 27777659 (+)
G4837 NA non-coding downstream 1349795 28104210 ~ 28105707 (+)
AMCG00003962 NA other upstream 134998 26582667 ~ 26586892 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 636768 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 926095 25785173 ~ 25795795 (+)
G4360 NA other upstream 2037970 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 2591998 24118384 ~ 24129892 (+)
G4831 NA other downstream 1307948 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 1625396 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 1700004 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 1813769 28568184 ~ 28585674 (+)
AMCG00003993 NA other downstream 1885759 28640174 ~ 28683981 (+)

Expression


Co-expression Network