AMCG00003975 (ascc3)


Basic Information

Item Value
gene id AMCG00003975
gene name ascc3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 27005973 ~ 27040898 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003975
AATATAAAACGATTATACTGCTGCACTGCAAGAGAATCTCGACTCACCCCCATTAAGGTGCAGAAATCACGAAATAAACAGCTGCGGGAGATCTTCCCGGATGGCTTTGGGATTCATCACGCAGGGATGCTGCGGCAGGACAGGACCCTGGTGGAGGGGCTCTTCTCCCGTGGACACATCAAGGTTCTCGTGTGCACGGCTACCCTGGCCTGGGGGGTCAACCTCCCGGCGCACGCTGTCATCATCAAGGGTACCCAGATCTATGACGCTAAGAGGGGTACTTTGGTGGATTTGGGGATTTTGGATGTTATGCAAATATTTGGTCGTGCAGGACGTCCTCAATTTGATAAATATGGAGAAGGAACCATCATCACAACACATGATAAACTGAGCCATTACCTGACTCTACTTACTCAACAAAACCCAATTGAGAGCCAGTTTCTGGCAAGCCTGGCTGACAACATGAATGCTGAGGTAGCATTAGGAACTGTGACCAACATTGAAGAAGCAGTAAAATGGCTAAGCTATACATACTTGTATGTACGAATGAGAGTGAACCCGTTAGTGTATGGCATCAATTACAAGACATATCagATGGATCCTGGTCTGGAGATGTACAGACAGAAGCTGGTGGTGGAGTCTGGGAGAAAGCTTGACAAAGCCAGGATGATCAGATTCGAGGAGAGGACCGGATACTTTTCTTCCACTGATTTAGGAAGAACTGCTAGCCACTTCTACATTAAGTACAACACCATTGAGACATTCAATGAGCTGTTTGATGCGCACAAAACAGAAGGTGATATTCTGAGTATTGTGTCTAAGGCAGAAGAATTTGAGCAGGTCAAGgTCAGAGATGAAGAGACTCAAGAGTTGGAGCAGTTGCTGCAAAATTACTGCGAGCTCCCCGCTGCCGGTGGGGTTGAAAATGGCTACGGGAAAATCAACATTCTGCTCCAGACCTACATTGGGCGTGGAGAGGTGGACAGCTTCTCACTTATCTCAGACCTCTCATATGTAGCTCAGAATGCAGCTCGAATTGTCCGTGCACTGTTTGAGATCGCCCTGCGCAAGAGGTGGCCTGCCATGACGTATCGACTGCTGAACCTCTGCAAGATCATAGACAAGCGCCTGTGGGGGTGGGCAAACCCACTGCGTCAGTTCCCTATACTGCCAGGGTCTATCCTTACCAGACTGGAAGAAAAGAATCTGACAATTGATAAGCTGAAGGACATGAGGAAGGATGAAATAGGCCACATGTTACATCATGTGAATATCGGGTTAAAGGTCAAGCAATGTGTCCACCAGATTCCTTCTTTAACAATGGAAGCCAACATCCAACCAATTACCCGCACAGTGCTCAGAGTGAGGCTAACCATAAACCCTGACTTCAAATGGCATGATCAGGTCCATGGATCAGTGGGAGAGCCCTGGTGGATCTGGGTTGAGGATCCCGCAAATGACCATATATATCACTCtgaatattttcttcttcagaaaAAACAGGTTGTCACCCATGAACCCCAGCAGCTGGTGTTCACCATCCCGATCTTCGAGCCAATGCCCTCTCAGTACTACATCCGTGCTGTTTCGGACAGGTGGCTCGGAGCAGAGGCAGTGTGTATTATCAACTTCCAGCACCTCATCCTGCCTGAGAGGCACCCCCCTCACACAGAACTGCTGGACCTGCAGCCTTTACCCGTTACTGCCTTGGGGAACAGAGAGTACGAAAGTCTGTATAAATTCACTCATTTCAACCCTATTCAGACACAGATTTTCCACACTCTTTATCACACTGACACCAACGTCCTCCTTGGAGCTCCCACAGGCTCTGGGAAGACTGTTGCAGCTGAAATGGCAATCTTCAGAGTCTTTAACAAGTACCCAGCATCCAAGGTGGTATACATTGCTCCTTTAAAGGCACTGGTCCGTGAACGAATAGAAGACTGGAAGATCAGGATAGAAGAAAAGCTGGGCAAAAATGTTGTGGAGCTGACCGGAGACGTGACACCTGACATGAGAGCAATCGCACAGGCCGACCTCATTGTCACCACCCCGGAGAAATGGGATGGGATCAGCAGAAGCTGGCAGAACAGGAGCTATGTCCAGAAAGTGTCCATTCTCATCATAGATGAGATCCATTTACTggGGGAAGATAGAGGTCCAGTGCTGGAAGTCATTGTATCAAGGACCAACTTCATCTCATCTCACACTTCCAAGTCTGTGAGGGTTGTGGGACTGTCGACCGCCCTGGCCAACGCTCGAGACCTAGCAGACTGGCTTGGAATTGGACAGATGGGCCTATTTAACTTCCGTCCCTCTGTGCcAATCCGCAGCCATTCCCCTGCCAAGCCCGTACTGATCTTTGTGTCGTCCAGACGTCAGACTCGCCTTACAGCTCTTGACTTGATTGCTTTCCTGGCCACGGAGGATGACCCCAAACAGTGGCTCCACATGGATGAGAGAGAGATGACTGATGTCATTGCTACAGTTCGGGAATCCAACCTCAAGCTGACCCTGGCCTTTGGAATAGGCCTCCATCATGCTGGCCTGCATGAAAGGGACAGGAGGACAGTGGAGGAGCTCTTTGTAAATTGCAAAATCCAGGTACTGATTGCTACCAGCACACTGGCTTGGGGAGTGAACTTTCCTGCCCATCTTGTGATTGTTAAAGGGACCGAGTACTACGATGGGAAAACAAGGCGTTACGTGGACTATCCTATCACAGATGTTCTCCAGATGATGGGCCGGGCTGGCCGGCCACAGTTTGATGACCAGGGCAAAGCTGTGATTCTTGTCCATGACATTAAGAAAGATTTCTACAAGAAATTCCTGTATGAACCATTCCCTGTTGAGTCAAGTTTGCTGGGTGTGCTCTCCGACCACTTGAATGCCGAGATTGCTGCCGGAACAATCTCCTCCAAACAGGATGCCATGGATTACATAACTTGGACATACTTCTTCCGGCGACTTGTTATGAACCCC

Function

symbol description
ascc3 Predicted to enable 3'-5' DNA helicase activity. Predicted to be involved in DNA dealkylation involved in DNA repair; DNA duplex unwinding; and cell population proliferation. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Orthologous to human ASCC3 (activating signal cointegrator 1 complex subunit 3).

NR:

description
PREDICTED: activating signal cointegrator 1 complex subunit 3

GO: NA

KEGG:

id description
K18663 ASCC3; activating signal cointegrator complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003975 True 2982 mRNA 0.49 21 27005973 27040898

Neighbor

gene id symbol gene type direction distance location
AMCG00003974 NA coding downstream 37958 26965722 ~ 26968015 (-)
AMCG00003970 NA coding downstream 48345 26940038 ~ 26957628 (-)
AMCG00003968 NA coding downstream 234057 26771294 ~ 26771916 (-)
AMCG00003966 NA coding downstream 322138 26651906 ~ 26683835 (-)
AMCG00003965 NA coding downstream 372270 26624640 ~ 26633703 (-)
AMCG00003976 NA coding upstream 194421 27235319 ~ 27254865 (-)
AMCG00003979 NA coding upstream 592182 27633080 ~ 27635364 (-)
AMCG00003978 hace1 coding upstream 957935 27998833 ~ 28041357 (-)
AMCG00003981 NA coding upstream 1066574 28107472 ~ 28126544 (-)
AMCG00003984 prep,LOC100698444,LOC106571155 coding upstream 1087014 28127912 ~ 28156934 (-)
G4782 NA non-coding downstream 40574 26964760 ~ 26965399 (-)
G4752 NA non-coding downstream 173562 26791158 ~ 26832411 (-)
G4727 NA non-coding downstream 247093 26758351 ~ 26758880 (-)
G4660 NA non-coding downstream 419081 26533880 ~ 26586892 (-)
G4829 NA non-coding upstream 1008641 28049539 ~ 28058411 (-)
G4838 NA non-coding upstream 1063711 28104609 ~ 28104980 (-)
G4900 NA non-coding upstream 1327101 28367999 ~ 28369982 (-)
G4921 NA non-coding upstream 1428676 28469574 ~ 28469852 (-)
G4922 NA non-coding upstream 1429292 28470190 ~ 28470417 (-)
AMCG00003967 LOC107095448 other downstream 136395 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 1007345 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 1104361 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 2709727 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 3248177 23740585 ~ 23757796 (-)
AMCG00004006 NA other upstream 2283843 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 3143720 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 3232908 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 3772883 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 3928781 30969679 ~ 30973496 (-)

Expression


Co-expression Network