AMCG00003977 (grik2,LOC101466412,LOC102291713,LOC102207761,LOC107740554)


Basic Information

Item Value
gene id AMCG00003977
gene name grik2,LOC101466412,LOC102291713,LOC102207761,LOC107740554
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 27380559 ~ 27382002 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003977
gGGATATTTGAATCCATTGAAAGTGGTCCTTCAGGAGCTGAGGAATTAGCGTTTAAATTtgctttaaatacaattaacaggAACAGAACACTACTGCCAAACACAACATTAACGTATGACATCCAAAGGATAAACATCTATGACAGTTTTGAAGCTTCAAGAAAAGCCTGTGATCAGCTGTCTCTCGGGGTGGCTGCCATCTTCGGTCCTTCACACAGCTCCTCAGCCAACGCAGTGCAGTCCATCTGCAACGCACTGGGAGTTCCTCACATTCAGACAAAATGGAAACACCAAGTATCAGACAACAGGGACTCCTTCTACGTCAGCCTTTACCCCGATTTCTCATCTCTCAGCCGAGCCATCCTGGACTTGGTCCACTTCTTCAAATGGAAAACTGTCACAGTGGTGTACGATGACAGCACA

Function

symbol description
grik2 Is expressed in Bergmann glial cell; cerebellum; granule cell; hindbrain; and optic tectum. Human ortholog(s) of this gene implicated in Huntington's disease and autosomal recessive non-syndromic intellectual disability. Orthologous to human GRIK2 (glutamate ionotropic receptor kainate type subunit 2).

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003977 True 423 mRNA 0.46 2 27380559 27382002

Neighbor

gene id symbol gene type direction distance location
AMCG00003971 NA coding upstream 500694 26878702 ~ 26879865 (+)
AMCG00003969 NA coding upstream 626144 26721890 ~ 26754415 (+)
AMCG00003964 NA coding upstream 730168 26634477 ~ 26650391 (+)
AMCG00003963 NA coding upstream 802355 26567730 ~ 26578204 (+)
AMCG00003959 NA coding upstream 819438 26532149 ~ 26561121 (+)
AMCG00003972 grik2,LOC107667969 coding downstream 48088 27430090 ~ 27449894 (+)
AMCG00003973 grik2,LOC103365520,LOC107103501,LOC105917636 coding downstream 110504 27492506 ~ 27506149 (+)
AMCG00003980 NA coding downstream 680553 28062555 ~ 28094602 (+)
AMCG00003982 NA coding downstream 716058 28098060 ~ 28098326 (+)
AMCG00003983 NA coding downstream 877694 28259696 ~ 28275388 (+)
G4787 NA non-coding upstream 98318 27282004 ~ 27282241 (+)
G4694 NA non-coding upstream 728992 26651285 ~ 26651567 (+)
G4595 NA non-coding upstream 1123534 26256781 ~ 26257025 (+)
G4594 NA non-coding upstream 1124453 26255789 ~ 26256106 (+)
G4593 NA non-coding upstream 1135922 26244247 ~ 26244637 (+)
G4804 NA non-coding downstream 201569 27583571 ~ 27584034 (+)
G4806 NA non-coding downstream 339458 27721460 ~ 27776442 (+)
G4808 NA non-coding downstream 395288 27777290 ~ 27777659 (+)
G4837 NA non-coding downstream 722208 28104210 ~ 28105707 (+)
G4917 NA non-coding downstream 1084915 28466917 ~ 28468944 (+)
AMCG00003962 NA other upstream 793667 26582667 ~ 26586892 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 1295437 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 1584764 25785173 ~ 25795795 (+)
G4360 NA other upstream 2696639 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 3250667 24118384 ~ 24129892 (+)
G4831 NA other downstream 680361 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 997809 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 1072417 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 1186182 28568184 ~ 28585674 (+)
AMCG00003993 NA other downstream 1258172 28640174 ~ 28683981 (+)

Expression


Co-expression Network