AMCG00003988


Basic Information

Item Value
gene id AMCG00003988
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28379811 ~ 28399741 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003988
ATTTTGTTTAGTGACCTACAAACGTAAGAAATGACCATACAAAGTGTCTCGGTTGAAAcagattgatgcatttaaatgtcgATGTAAAAGTGAAATATCATTACAATATCACTGTGCGTTTCCAAAGAGGATGTGCTCAGTTTTCAATGTCGGAACTACATGTCAAGGTGGAGGCTGTTTCTTGTAGGATGTGTTTTAAGGGGACATTACAATGGCGCTGCACTGTAGCAGAACGTGTAGgaaatatttattacatgtagCCCAAGAAAACATTGAATTCAGACTACCGgaAATCAAATCCCTGCTTTCGCTCAATGGAGAATCGTTTATCCCAGAAGAAAACTTTGatgaaaagTCCCCATTCTGGGTCCTCAACAGTGTTTCAGAGGAAGGGATAAGAAGGGTTATGAAACGAACTGTGTGTGCAAAGTCAGTATTTGAGCTATGGGGGTTTGGAAGAACACCCCAGGAGTTACAGTCATCGCTGAAGAACTGGCCAGTGGAAAACATGGTTCCCTATCTGACGCGTGACTcaacatacaaaattaatatttatacattcaacAAAACTCTTCTGCATCAACAGAGAATCCAGAAGATAGATGCTCTAGAATTTCTCCCATTCCAAGGGAAAGTAAATTTGAAGAACCCAGACCATGTCTTCTGTCTACTGGAAGACTACGGTTCTGATCCCAATTGCATTCCAGATGAACCCTTTCGTATCTTCTTCGGGCGATGGAAGCGACATTTCATTGGAAACACAAGCATGGACGCTGGGCTGTCCTTTATAATGGCCAATCATGCCAGAGTAAAACCTAATGACTTGGTTTATGATCCATTTGTTGGAACAGgtagCCTTCTTGTTGCATGCGCTCATTTTGGCTCCTATGTATGTGGCACAGACATTGATTACAACACAATCCACGGAATAGGAAAGGCAAGCAGAAAGAACCAGAAGTGGAGGGGACCTGATGAAAACATCAGAGCTAACCTAAGGCAGTACGGAGCAGAGAAATCCTATATTGATGTTCTGGTGTCAGATGCCTCTAAAACCATATGGAGAGCAGGAGCTGTGTTTGATGCCATCATCACAGATCcCCCATATGGTATAAGAGAATCTACAAGGAAAACAGGCTCCCAGAAAGAAATCATAAAGCCACCAGAAGACTACGGTGGAGAAAGTCATGTCCCTGTGTCAATGGCCTATCATCTCAGTGATATCTTCACAGACCTGCTGAACTTTGCATCAAAGTATCTTGTCATGGGAGGAAGACTAGTGTACTGGTTACCAGTGTACAGGCCTGAATACAAGGAAGAAATAATACCCCAGCACCCTTGTCTGAAACTTATTAGCAACTGTGAGCAGACACTTTCCAGTCATACGTCCAGGCGTTTGATAACCATGGAAAAGCTGAAAGAATTTGAGTATACTGACGAGCTCGCACACCTTGTAGAGTCTAAATTCAGCCCATATCAAGGTCACAACTCATTCCGGGAGAAGTACTTCAGTGGCTTAACGAAGAAGACGGGCATGCAGGAGGCTAAGAACTTGAAAATTGAAGGCTGAATCATAGGTTTCTCATTTTCACTCAGGGGACTGGAATATAACACGTTATGCAAATCTGCTGAATATGGAAGCATTTCTTGCTCcgagttttattatttgtttttactatgTTAAATGTGAAGTTTCTTATTCATGTCATCCATTGTTTGTGACTATTTAGATTCAAAATTGCAAGATTGAATTAGTTTCTGAACTACCAAAGATCATTTCTGTTTAGGATTGGGCCATTGTACTCTTGCATTTTGTTGCCTTAATTGTTGTGGTGCAGTTAAGTGATACAATATTCACCGAGTTCGATTCAAACGTGCCCAGTTCTGCATGTTACTGACATCCTAAagctttgtaaatatttgtctAGCATCCAGATACACTATATTGGAACTGTGTATTAATAAATTGTCTTCCATTTAAGCAATGGAATGTATCTGTTAATTTCTTTGGGGGTTGTTTCAAAACtttgatgtaatttttaaataaagttgttAGCTGATGTTTTAATCTTAATACTGGAGAGCCTCTTTTAACTTCATCATTTGATTATTAAatctctgcattttatttttaatatcttgtAGGCCTTCGAATTTAAGCGAGTAAGTGAGGGCAAGCCAACATCTTGACATCCCTGGTACCTGTTCTTAAAAAGCTTCGTTTTTTAGGTAATGTGACTCAGACAGACTTCTCATATACGTTCATGCATCGCTACAATATCAGACTTGCTTTTCAATATAAACACCTATAATTATCTGTATATTGCAGTTTAGTGCtcaaatgtgtatgtgtatctgcCTGTTGATTGTCCTCTGTGCATTTCATAAGCATTCAAGCTCAGCGATTTACAGCTCTCCAGATGTCCTGCCGTTTTTCATTCCAAAACGGCTGATCGTGACAAACTGCAGCCTTTTTTGTTGATGTATTGCTCATCTCTccgctttgttttcttttgccaactttTGAAGGTTTACTTTTTCTAGGGATGGTCTGAGGGATTTGTAACACCCACAGATTTCTGTAGGGAACTGTCATTTGAATCATTGGCATGATAATCAGTAGTCGAGGCTTTGTGGAAAACCCACAGCCTTTTCCAGTGCTGGGCTTATTAATGCGAAGCCAGTGCTCATACATGAAAAAGGTTTCAGCTGTTCATCTCGGTTTGTAACGCACGCTCTGTTTAACAGTACACTGTGTCCGGTTAGCAGAATCAGACACAagttataaaatattttcagcatCTGTCTCACTGTACCCTGAGTGTGAAAACccaaattatttataatatatattttctccatCGACTACAAAGACAGAAGAGACGTGCAGTTCACTGCGGCCTGCTGATTTCCCTAACAGCCTTCTTGTAGTCAAtgcatgttttgtaaaatataattttaatgatatccttggatattattaaaaaatgaatttatgcCATCCATTACCcttgtttaagaaaacaaattgacagGGGGTTATGAATAGCTCCACTGGAGATATTAAAGCTCATTCTTCCAGCGCTAAACTTCATTTGCCAGTTGTTGCCAATTTATAGCTTAGTAAGGCtctcatttatttacatttgggAATGCAAGGCGCCCTGCTGGTGCTGTAACTCTATCCTCTGTACCCCAAGTTCATACGAACGGCTGgtttactttaataaaacacgGACAATGCACCTGGAGATCACTGCAGACAGGTATGTTTAGTGCACAAAAACAGTTGACAAGTACATTAAGAATAAATATCGTAACGCTTTCCTACACTGGTGGTGACTTGGATGCCGTCCATTAGTGTAGAAAAGTTCTTTCTCTTGGCTCTGGTTTTAATACATCTTCTCTCCTAGTTCCCTATTTGAGTGCATTTACAGTTCATGGTGATACTGTAACCTTTAAATTCTAGGCCTGTTCATCTGTGATCTCATTTTCTGACTATTTACTTTCCTTCActcaaaagtatatattttgaacTTGATTACTTTGTGTATACCATCCTAATAGCAGACAAGTTATGAAATTAGTTGTGGATCCCTTCCTGATTATGATTTTTGTTCCCAATGAGGCATTTTgactgaaagaaaattaaaaaagcctctcagaaaacctgtttttctttttatctttatgATGTTATGTTGGGTTTGTGTATTTCTTGTGTAAAAATTAAACCCTTCTACAACCCTTCCTGAGGCTAATCAATGACATTGAAGTATGTTTAATACATCACCTATGGGCCC
>TU5991
CTTGTAGTCAAtgcatgttttgtaaaatataattttaatgatatccttggatattattaaaaaatgaatttatgcCATCCATTACCcttgtttaagaaaacaaattgacagGGGGTTATGAATAGCTCCACTGGAGATATTAAAGCTCATTCTTCCAGCGCTAAACTTCATTTGCCAGTTGTTGCCAATTTATAGCTTAGTAAGGCtctcatttatttacatttgggAATGCAAGGCGCCCTGCTGGTGCTGTAACTCTATCCTCTGTACCCCAAGTTCATACGAACGGCTGgtttactttaataaaacacgGACAATGCACCTGGAGATCACTGCAGACAGGTATGTTTAGTGCACAAAAACAGTTGACAAGTACATTAAGAATAAATATCGTAACGCTTTCCTACACTGGTGGTGACTTGGATGCCGTCCATTAGTGTAGAAAAGTTCTTTCTCTTGGCTCTGGTTTTAATACATCTTCTCTCCTAGTTCCCTATTTGAGTGCATTTACAGTTCATGGTGATACTGTAACCTTTAAATTCTAGGCCTGTTCATCTGTGATCTCATTTTCTGACTATTTACTTTCCTTCActcaaaagtatatattttgaacTTGATTACTTTGTGTATACCATCCTAATAGCAGACAAGTTATGAAATTAGTTGTGGATCCCTTCCTGATTATGATTTTTGTTCCCAATGAGGCATTTTgactgaaagaaaattaaaaaagcctctcagaaaacctgtttttctttttatctttatgATGTTATGTTGGGTTTGTGTATTTCTTGTGTAAAAATTAAACCCTTCTACAACCCTT

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15430 TRM11, TRMT11; tRNA (guanine10-N2)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003988 True 3800 mRNA 0.39 13 28379811 28399741
TU5991 False 826 lncRNA 0.51 1 28398863 28399688

Neighbor

gene id symbol gene type direction distance location
AMCG00003989 NA coding upstream 638 28373146 ~ 28379173 (+)
AMCG00003985 NA coding upstream 9837 28354515 ~ 28369974 (+)
AMCG00003983 NA coding upstream 104423 28259696 ~ 28275388 (+)
AMCG00003982 NA coding upstream 281485 28098060 ~ 28098326 (+)
AMCG00003980 NA coding upstream 285209 28062555 ~ 28094602 (+)
AMCG00003992 rnf146,LOC107735261 coding downstream 188090 28587831 ~ 28591593 (+)
AMCG00003994 NA coding downstream 290147 28689888 ~ 28698767 (+)
AMCG00003998 LOC105908890,LOC105419921 coding downstream 318041 28717782 ~ 28731033 (+)
AMCG00003999 NA coding downstream 332168 28731909 ~ 28751998 (+)
AMCG00004003 NA coding downstream 682352 29082093 ~ 29108404 (+)
G4837 NA non-coding upstream 274104 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 602152 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 603369 27721460 ~ 27776442 (+)
G4804 NA non-coding upstream 795777 27583571 ~ 27584034 (+)
G4787 NA non-coding upstream 1097570 27282004 ~ 27282241 (+)
G4917 NA non-coding downstream 67176 28466917 ~ 28468944 (+)
G4981 NA non-coding downstream 492943 28892684 ~ 28893031 (+)
G5005 NA non-coding downstream 552812 28952553 ~ 28953065 (+)
G5085 NA non-coding downstream 954780 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 1284486 29684227 ~ 29685543 (+)
G4831 NA other upstream 276600 28062363 ~ 28103211 (+)
AMCG00003962 NA other upstream 1792919 26582667 ~ 26586892 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 2294689 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 2584016 25785173 ~ 25795795 (+)
G4360 NA other upstream 3695891 24683400 ~ 24683920 (+)
AMCG00003990 NA other downstream 54678 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 168443 28568184 ~ 28585674 (+)
AMCG00003993 NA other downstream 240433 28640174 ~ 28683981 (+)
AMCG00004011 ccnc other downstream 1127673 29527414 ~ 29541358 (+)
G5245 NA other downstream 1871469 30271210 ~ 30271524 (+)

Expression


Co-expression Network