AMCG00003989


Basic Information

Item Value
gene id AMCG00003989
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28373146 ~ 28379173 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003989
CTTCGCCAGAGGCTGAGCGGAGACCATGGCAGCTACTGAGGGCGCCGCGCAGGCCGGCCCCAGTGCAGGGCCGGTGAAGAGCCGGGCTCAGGCGGACGGCTACGACAagacctgtatcttctgtaaaATTGCCAGCCAACAAACCGACACCGAGTTGGTGCATTTCGATGGAGATCTGGCatgttttaaagatataaaGCCAGGAGCTCCTCAGCACTACCTTGTTGTGCCCGTGAAACATGTTGGAAACTGCAGAAGCCTCACAAAGGATCATGTACCATTAGTGGAGAAGATGGTGGAGGTGGGAAAATCGGTGCTGCAGAAGAACAACATTACAGACCTCAGTGACGTCAGGCTGGGTTTCCACTGGCCCCCGTTTAGCTCTGTAAATCATCTGCACCTTCATGTGTTGGCACCTGCTAGTGAGATGGGTTTCATgtccaaaatattttacagaattgACTCGTACTGGTTCGTTACAGCTGAACAGCTCATCCAACGGCTTAATTCCCTCAGTGAAAGCAACTGAATCTGGGCTGAGCTCCACTACCTCATGTTATTTTGCACTTTGGAACGAGACCAGTAATATGTGTGTAAACAGCCTGAACAGGAAGGGTAACTCATTATATAGTTAAATCTGTAACCAATGTATTTACTAATCATTTTAAAGGGTACTTAATTTCAGACTctgtaataaacaaatataagaaATAGTAAACATCTCAATTTAGTTCCAAATGATTCCTTCTGTTGCAGTCTGctgtgaagattttttttaattttcaacaaattaaaaaaaagattaacttgtttacaattttattttaattcttgtgTGAACGCATGTGCTATACTATACAGTAATGATCCAGTTAATATGTTTCAGGAACTTTATATTACAGAACTCATGTGATTAACCTCCCTGCCTTTTAAACACTGCACTATGttggtgtaaaataaataaaaacaaattaaaaatatagtatttCCTAACAAATTGTATTGTGGAAATACGAATGAATGATTATACAGCCTAAACAGGGGAACCAGAGATACGTGCAGGTGTGTCCTGGGATGAATGAGGTGGAAAATGGGATCCTGTCACCATTGACTCCAATACAATGTAGACAAGCTTATGTGTCtgttaaaacagaaaagactCCAATATGTTGGTGAGTGGAAAAGGCATGGATTTACTCTTGCAATCTCCAGTAGGGTGAACTGACCCTGTCCTATGGGGTAGGAGATGTTTGTAACGCATTGTAATCTAATTTTTTGTTCATGGTATATATGACCGAGTAGCTAAAGGACTACAACAAATGCACGATTATCTGATCTTGACAGTAAATAAACTGATCTTGTTTTATTGCAGACCTCCTACTGGTGAACTATTTTGAATGATCtttcatatacaaatacattgtacaaCGTTACTGAATTTGTACTGAACTTACTAGTGTGTGGGATTGAGATCTGTAAAGTAATATATTCATTTGGAATTAAACATCTGTATTGATTCAAAAGCTGATTTATTGCTGGTGCTTTTCTCTTtacaactgttttgtttttttgttgcatatatacatgttattttgCATAACATACATATGAGttgaaacattttctgtaattggtataaatacaattcttacaaataacattgaaaatacctacaaaagtgtacaattgttttcttaaatctagtgacaaataattaaatcGTTTTTAGCAAAAATTGACATTATAACAGAGGTTAAACAATAGAAGTTATATAATATGTGATATAGCTTCTCTTCAGttcagttaaaatgttaattgaatgcACACGCATTACtaatgaatttatatatatcatatacactTCTATATATTAGCACCCCAATCATGAGCTTAggacatttttgtgtgtgtgtgtagacaaTATGAATAGGCTTGATCTTCTGTTGCAAACTACACAATTCtatgtgtttcttttcacagaAACGTCAACTTCACTGCAATAGCACAATTCAGATTAATCAATCacggttttgttttaaagtatacAATTATCTGTCATCGCTTAAATTATTGTGCCGTTACAGATCACTGTGTGGTTGTGACTAACAACATTATTGCATATTTCCAGCTGTCTCTCATTGTGGAAAATACCTCTGCATATTAGGTAAACGTTTCAGCACGGATCTTCTGGCACATACTCTTCTAATTGCACTAGCCACTTAgcctggattaaataaaaatgctgacTCCCTGCCAAATGCAAATTCCTCCAGTGTCACCTGATCCTGTGGCTGTGTTTGCCAGAGGCTTCCCGCATCCACCCTAATGTGGCCCTTTTTTAGGCTGACGTTATTTTGGAGAATAGCTGTTCTTTATAAAAACGACACTGTGGTGTTGAAAGCAAACCTGAGTGAACCTTCACCACCTCGCCCCTCTGCACGGAAGCAGTGCAATGCGGACGCGGTCGTCTCTTCCTTGCCAGAGCATCTCTCCCTCGAAGGCAACCAGCCCCTGCCTCCGCGCCCTCAGGAGGAGCCCCACCACTTTGTTGGAGATGGTCACATACCGCTCGAACAGCTTTCCAAACTCGACCACGGTGGCCCCGTCCTCTCGGCGCTCTCCAACGCTTTGGATGATCAGACACAGCTCCTGCACCTCTTTTCCAACGTGGCTGTGGGCATCCCGTCCCCTCCGCTCGGTCTCGGAGCCCTCTCTCGGCCTCCCGTATCCCTCCTGCCCTTTCTGGAAGTGCACTGTCATTGTCTTGTTGTTACTGAAGGGATTGTGTTTCTGGTACTCCGAGTGATCATTTGACCATCTCTGCCAGTTCTGGGTTAACCCTTCAACGGTGCTAACATGACTCGCATTTCTAAGGTTACCATGAACAGTGGCATCCTCTCTTTCCATGTTCGTTCTCTTGCTCCTGGTAATATAGCTACAGTGTATCTTCTAAAAATGCACCAGCATCCTCAGTGTCTTATTCAATTAATATAGTTGGAAACACTCCTTTCGTGATAAACAGCTGCATCCTATTGCATGTAGACGTTTCAATTCCATGTTCTACAGATGTGGAGATCTCTGGACTAAAACAACACATCTGGTTCTTTAAAGTTGAACAGGGTTGACAATGCATCTAAAATCAGAAGGCTCTCTCCTAACGTAATAGTTTGTATGCTTATTTAATGCCACCAAGTATCGAAGTATTAACTACACATTACAAACCAACGTTAATCTTAAAAAGGGTAGGTGAAACC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003989 True 3254 mRNA 0.40 6 28373146 28379173

Neighbor

gene id symbol gene type direction distance location
AMCG00003985 NA coding upstream 3172 28354515 ~ 28369974 (+)
AMCG00003983 NA coding upstream 97758 28259696 ~ 28275388 (+)
AMCG00003982 NA coding upstream 274820 28098060 ~ 28098326 (+)
AMCG00003980 NA coding upstream 278544 28062555 ~ 28094602 (+)
AMCG00003973 grik2,LOC103365520,LOC107103501,LOC105917636 coding upstream 866997 27492506 ~ 27506149 (+)
AMCG00003992 rnf146,LOC107735261 coding downstream 208658 28587831 ~ 28591593 (+)
AMCG00003994 NA coding downstream 310715 28689888 ~ 28698767 (+)
AMCG00003998 LOC105908890,LOC105419921 coding downstream 338609 28717782 ~ 28731033 (+)
AMCG00003999 NA coding downstream 352736 28731909 ~ 28751998 (+)
AMCG00004003 NA coding downstream 702920 29082093 ~ 29108404 (+)
G4837 NA non-coding upstream 267439 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 595487 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 596704 27721460 ~ 27776442 (+)
G4804 NA non-coding upstream 789112 27583571 ~ 27584034 (+)
G4787 NA non-coding upstream 1090905 27282004 ~ 27282241 (+)
G4917 NA non-coding downstream 87744 28466917 ~ 28468944 (+)
G4981 NA non-coding downstream 513511 28892684 ~ 28893031 (+)
G5005 NA non-coding downstream 573380 28952553 ~ 28953065 (+)
G5085 NA non-coding downstream 975348 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 1305054 29684227 ~ 29685543 (+)
G4831 NA other upstream 269935 28062363 ~ 28103211 (+)
AMCG00003962 NA other upstream 1786254 26582667 ~ 26586892 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 2288024 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 2577351 25785173 ~ 25795795 (+)
G4360 NA other upstream 3689226 24683400 ~ 24683920 (+)
AMCG00003988 NA other downstream 638 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 75246 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 189011 28568184 ~ 28585674 (+)
AMCG00003993 NA other downstream 261001 28640174 ~ 28683981 (+)
AMCG00004011 ccnc other downstream 1148241 29527414 ~ 29541358 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_00775184_00778097 HINT3 coding CI01000016 null 774658 ~ 778097 (-)