AMCG00003990


Basic Information

Item Value
gene id AMCG00003990
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28454419 ~ 28465646 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003990
GTCATGGTGTGCGACGGTAGTAAGGCGGcagtttgaatttgttttgacaAATAGAGGAGATAAAGAAAATTCAGCGGTAATTCCATAAAGAAACTAATacttttaaacagaaatacGACTCATTTCACATTTTCGGGGCAGACGATACAGATCATGAAGAAAGTGTCAAGAAGTAATCTCAAATCAATCATGAAGAAGAAACCAAACCTCCGGCTTGGTACAAACACAGACTTAATgGTGCAGTTGAACCTCCTGCTCTTTCTTCATCGTTTGGCAGAGGAATCCCGAGCCAAGGCTTTTGAAGCCAGAACTGCAACTATTAAGCCTGAACACATAAAGGCAGTATCAAAGAGTCTTCTTAAGAAGGCCAGGGGATGAAGACTAGAGATgaacacaaaaggaaatgcTTGTTTAATGTTGTCTGCTGCAGCTTTGTAACAGTCTCTGTATTTCTGCTGTGACTTTGAGAAGTCTTTGAAATATCTGGGGTGGGAACCTGAGGAAGAAGAATGAACAGACATGTAGTTATTTAACATGAAGATAATTGtgattgaaaattattttttctatccTGATGTGTGTTTaacatttactattattatttattgaataaaataatctagccttttgtttttcttccaataTGGGTGTCTTATGTACACTTTATATTTGCACTACTCACCATGCCCTCCGTTTGCCAtgttttgtatgtctgtgttCATCGgcacataatttattttgtcaaaatgtattGCCATACTTGGTTCAACTTTAAACTGCTTTTGCATCCTTGAAAATGTCTGTGCTGCTAGATACATTTGTCCCAAGAATCCATTCTCTGCCACTGATGGAGGTCTGAATGAGGAGACGTGGGAGACACTGTGAAAGAGATCAACAAACAAATTCCTTCTGGATTCTTAACTTGATTGGATTTCCACATTTGTAGGGTAAAAGGAGCTATAGAATATTCTCTTAAATTTCTGCTGCTTTAGAGTAGCACACAACTCAGTCTCTACACTTGCCTTGGTGGTTTGCCTGTCCTCTTGGTGTCTCTTCCACAGTTCAGTTGTGGGTTGTTCTATATTTCCGATTTGGCCTAAACCAGACCTGAACCCTGGACTCTAAAGgtaaatgttattgtattaaCCTGCGTTGCAATCTACCCTCTGCttgcttctgttttctttcctggTTCACTTAGGTCTTATTTTGTACTATATTCCACTGAAAGTAAAACTAATGAGGCCCTGTTTACATAACTAGCCTTTTTTGCTGTGATTATATCTCATTGAGTTATCTGGTCTAATCCTGCTGTCAAAATTAATTGGGCttgcagcattttatttctggtAGCTTTACTGGTTTGCTTATACAAGGGTTTTGAACTTTAAAGgataacatttaataatgcattgac
>TU6005
CGGTAGTAAGGCGGcagtttgaatttgttttgacaAATAGAGGAGATAAAGAAAATTCAGCGGTAATTCCATAAAGAAACTAATacttttaaacagaaatacGACTCATTTCACATTTTCGGGGCAGACGATACAGATCATGAAGAAAGTGTCAAGAAGTAATCTCAAATCAATCATGAAGAAGAAACCAAACCTCCGGCTTGGTACAAACACAGACTTAATgGTGCAGTTGAACCTCCTGCTCTTTCTTCATCGTTTGGCAGAGGAATCCCGAGCCAAGGCTTTTGAAGCCAGAACTGCAACTATTAAGCCTGAACACATAAAGGCAGTATCAAAGAGTCTTCTTAAGAAGGCCAGGGGATGAAGACTAGAGATgaacacaaaaggaaatgcTTGTTTAATGTTGTCTGCTGCAGCTTTGTAACAGTCTCTGTATTTCTGCTGTGACTTTGAGAAGTCTTTGAAATATCTGGGGTGGGAACCTGAGGAAGAAGAATGAACAGACATGTAGTTATTTAACATGAAGATAATTGtgattgaaaattattttttctatccTGATGTGTGTTTaacatttactattattatttattgaataaaataatct

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003990 True 1417 mRNA 0.38 3 28454419 28465646
TU6005 False 607 lncRNA 0.55 3 28454433 28464850

Neighbor

gene id symbol gene type direction distance location
AMCG00003989 NA coding upstream 75246 28373146 ~ 28379173 (+)
AMCG00003985 NA coding upstream 84445 28354515 ~ 28369974 (+)
AMCG00003983 NA coding upstream 179031 28259696 ~ 28275388 (+)
AMCG00003982 NA coding upstream 356093 28098060 ~ 28098326 (+)
AMCG00003980 NA coding upstream 359817 28062555 ~ 28094602 (+)
AMCG00003992 rnf146,LOC107735261 coding downstream 122185 28587831 ~ 28591593 (+)
AMCG00003994 NA coding downstream 224242 28689888 ~ 28698767 (+)
AMCG00003998 LOC105908890,LOC105419921 coding downstream 252136 28717782 ~ 28731033 (+)
AMCG00003999 NA coding downstream 266263 28731909 ~ 28751998 (+)
AMCG00004003 NA coding downstream 616447 29082093 ~ 29108404 (+)
G4837 NA non-coding upstream 348712 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 676760 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 677977 27721460 ~ 27776442 (+)
G4804 NA non-coding upstream 870385 27583571 ~ 27584034 (+)
G4787 NA non-coding upstream 1172178 27282004 ~ 27282241 (+)
G4917 NA non-coding downstream 1271 28466917 ~ 28468944 (+)
G4981 NA non-coding downstream 427038 28892684 ~ 28893031 (+)
G5005 NA non-coding downstream 486907 28952553 ~ 28953065 (+)
G5085 NA non-coding downstream 888875 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 1218581 29684227 ~ 29685543 (+)
AMCG00003988 NA other upstream 54678 28379811 ~ 28399741 (+)
G4831 NA other upstream 351208 28062363 ~ 28103211 (+)
AMCG00003962 NA other upstream 1867527 26582667 ~ 26586892 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 2369297 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 2658624 25785173 ~ 25795795 (+)
AMCG00003991 NA other downstream 102538 28568184 ~ 28585674 (+)
AMCG00003993 NA other downstream 174528 28640174 ~ 28683981 (+)
AMCG00004011 ccnc other downstream 1061768 29527414 ~ 29541358 (+)
G5245 NA other downstream 1805564 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 1831221 30296867 ~ 30307175 (+)

Expression


Co-expression Network