AMCG00003991


Basic Information

Item Value
gene id AMCG00003991
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28568184 ~ 28585674 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003991
CCCCTTGACTGCAAGATGTTACTTCCAAAACGGCCCTGGCATTTTTGGGCCCTTTTTGACAATATTTCTATCTCGTCTGTGAAAGTCTTGGGGTTTTGCTCATttttgggataaaaaaaaaaatccacagatACCTTTGCAGAGGACATTGATATAGATACAAGAAGAAACATCTCCGGGTTACTATGCAATTGCGACAGATATCCTTTGTTTTGATCTTCTTGCATTGTATGGAGTACATTGACAGCCAGCACGCCTCCAGAAGCAGGCAAAATAGACagAATCCTGGAGTTACCCATGGATGCCAAGGGGGATGTGCAACCTGTTCTGATTACAATGGATGTTTGTCTTGTAAACCCCggctgtttttcttcttggaGAGAAATGGGATGAGGCAGACTGGAGTGTGCCTACCCTCCTGCCCAGCTGGTTACTATGGCACCAGATCTCCAGAAATTAACAAATGCACAAAGTGCAAATCAGACTGTGATGCCTGCTTCAACAAGAACTTCTGTACCAAATGTAGAGCTGGCTTTTATATACATAGGGGAAGGTGTCTAGAGAGTTGTCCAGATGGGCTGGGGCCCAATGACCAACTAATGGAGTGCACCACTATTGTGCACTGTGAAATGAGCGAGTGGAGCGCTTGGAGTACATGTTCTCGGAAAGGAAAGACTTGTGGCTTCAAAAGAGGAGAAGAAAGCAGAAGTCGAGTGATAGTCCAACACCCGTCCCCTCATGGAGACCCCTGCCCTGCTCtttctgaaaaaagaaagtgtgttgtgaaaagaaaaaaatgtcgAGAAGGGAGTAAAGGGCAAGGTCAGAGGAAGCGGCGCCCAAATAGGAGGGAGAACCAGGACAGCAGgcaagaggagagagacagagagatcaGTGACAGGGAGGACtcagagaacaaaaacaagactgaaCACAGGAGACGAAAAGCACAGAACAAGGAACAGATCTCTACAGCTGGGAGCCCAGCACACTAACAGCCTCACTGGATTGTTAAAGACTAAAGATGCTGCTAcctgtataatttaaatatagactGTATatgcacaagaaaacaaaaagaaaaaagaaaaaaaagaagcctGCAACTTGATTGTGGACATCAGCCCAAGCTGTCTTGCTTCCTTCCCCGATTTGGATGGCAAATTCAATAGTGACACAGAAGGACACTAACAAGACCTGACCAGTCCATAAGCAGTGAAGTTCAGTTGTGGAATATAaactgtttgtctgtttgtttgtttttaggttgATGTTGTTCTTGtcaaattgttatttaatggGGCCAGGTCCAGCATTACATCAAGGTTTGAATGTAGGTATCGTGACATTATTTAGAGTCATTGTTTAGATGTCTAATAATTCctgagtaaattaaaataaaatgtgcttacACACAAATGGATTCTGTGACTGCATGTTGacctgtaaatgtatgtatggggtgggg
>TU6014
GTAGACTCGCCCTCCAAATAAACTTTGCAGCTCGCAGGCAGCCGGGAGACAGTGGGGAGTTAGACGCGCAGCGGAGAGAGCGGAGGGACTAGAGCCGCACAGAGGCATGTACATTCAGAAGGGATATTAAAGTCAAACCTCAATTCGAGACTGGACAGAGCTGGCACCGAGAAGTTTCGAcctttaatatgtatatatatacgtgtgtgtgtgtgagagagactgaTGCTGCTGCGATGATGTGAATCTCTAAAACCAAGACTCCCAAGAAGCTGCGCTCAGAAAGCATCTCTTGTAGCTGGACGTTAAAGAAAACTTGTCCCTGACATTAGGGAGGCACTGCAACAAGCTTCCTTGCGTTGTTCAAATTATTCGCAATTCAGagAATCCTGGAGTTACCCATGGATGCCAAGGGGGATGTGCAACCTGTTCTGATTACAATGGATGTTTGTCTTGTAAACCCCggctgtttttcttcttggaGAGAAATGGGATGAGGCAGACTGGAGTGTGCCTACCCTCCTGCCCAGCTGGTTACTATGGCACCAGATCTCCAGAAATTAACAAATGCACAAAGTGCAAATCAGACTGTGATGCCTGCTTCAACAAGAACTTCTGTACCAAATGTAGAGCTGGCTTTTATATACATAGGGGAAGGTGTCTAGAGAGTTGTCCAGATGGGCTGGGGCCCAATGACCAACTAATGGAGTGCACCACTATTGAGTGCAAAGCTGATTGTGAGATCTGCTCCAACAAAAATGTNNNNN

Function

GO: NA

KEGG:

id description
K23098 RSPO3; R-spondin 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003991 True 1468 mRNA 0.43 5 28568825 28585674
TU6014 False 767 lncRNA 0.54 4 28568184 28576934

Neighbor

gene id symbol gene type direction distance location
AMCG00003989 NA coding upstream 189011 28373146 ~ 28379173 (+)
AMCG00003985 NA coding upstream 198210 28354515 ~ 28369974 (+)
AMCG00003983 NA coding upstream 292796 28259696 ~ 28275388 (+)
AMCG00003982 NA coding upstream 469858 28098060 ~ 28098326 (+)
AMCG00003980 NA coding upstream 473582 28062555 ~ 28094602 (+)
AMCG00003992 rnf146,LOC107735261 coding downstream 2157 28587831 ~ 28591593 (+)
AMCG00003994 NA coding downstream 104214 28689888 ~ 28698767 (+)
AMCG00003998 LOC105908890,LOC105419921 coding downstream 132108 28717782 ~ 28731033 (+)
AMCG00003999 NA coding downstream 146235 28731909 ~ 28751998 (+)
AMCG00004003 NA coding downstream 496419 29082093 ~ 29108404 (+)
G4917 NA non-coding upstream 99240 28466917 ~ 28468944 (+)
G4837 NA non-coding upstream 462477 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 790525 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 791742 27721460 ~ 27776442 (+)
G4804 NA non-coding upstream 984150 27583571 ~ 27584034 (+)
G4981 NA non-coding downstream 307010 28892684 ~ 28893031 (+)
G5005 NA non-coding downstream 366879 28952553 ~ 28953065 (+)
G5085 NA non-coding downstream 768847 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 1098553 29684227 ~ 29685543 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 1111993 29697667 ~ 29699224 (+)
AMCG00003990 NA other upstream 102538 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 168443 28379811 ~ 28399741 (+)
G4831 NA other upstream 464973 28062363 ~ 28103211 (+)
AMCG00003962 NA other upstream 1981292 26582667 ~ 26586892 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 2483062 26081283 ~ 26085122 (+)
AMCG00003993 NA other downstream 54500 28640174 ~ 28683981 (+)
AMCG00004011 ccnc other downstream 941740 29527414 ~ 29541358 (+)
G5245 NA other downstream 1685536 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 1711193 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 2302321 30887995 ~ 30894827 (+)

Expression


Co-expression Network