AMCG00003995 (elovl4,LOC108434897,LOC105908900,LOC103388604)


Basic Information

Item Value
gene id AMCG00003995
gene name elovl4,LOC108434897,LOC105908900,LOC103388604
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28699380 ~ 28715591 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003995
CACGGAAGCAGCAGCAGTGCATTGCAAGCCCCCCATGTAGGATCTCAGtatagacattttttttttttgcctttgtgttttttctgccaAACGCATGGCTTCCGATAAGAAATAAATCCGCGCACCTTGCTTTTCTGCTGTTTTCCAGGAAGGAGGGgcttttaaactgcatttttttctgacCTTGTATTGAATGTCACCAGGAGGATCTTAATTCGTGATAAGtgcTTGACTTGATTACCAGGGAAAGGTTGAGATCATGGAGATTGTAACTCATTTCATCAATGATACCATTGAATTCTATAAATGGGGCCTTACCATAGCAGACAAGAGGGTGGAGAAGTGGCCATTGATGCAGTCTCCTCTACCCACACTAGCAATAAGCTCTCTTTATCTTCTGTTCATTTGGCTGGGCCCAAAATGGATGCAGAATAGAGAACCTTTTCAGTTGCGATCTACTCTCATCATCTATAACTTTGGAATGGTTATATTGAATTTCTTTATCTGCAAAGAGCTCTTCCTTGCTGCAAGATCTGCTGGTTACAGTTACATCTGTCAGCCTGTGGACTATTCAGAAGATCCCAACGAAGTGAGGATAGCTGCGGCACTGTGGTGGTACTATGTCTCAAAGGGTGTGGAGTACCTGGACACTGTGTTCTTCATCCTGCGCAAGAAATTTAACCAGGTCAGCTTCCTCCATGTCTATCACCACTGCACAATGTTCACCCTCTGGTGGATTGGCATCAAATGGGTGGCTGGAGGACAATCTTTCTTTGGAGCTCACATGAATGCATTCATCCATGTAATTATGTACTTATACTATGGACTGGCTGCCTGTGGCCCTCGGATTCAGAAATACCTGTGGTGGAAGAAATATTTGACGATTATACAGATGattCAGTTCCATGTCACCATTGGTCACACAGCTCTGTCTCTCTACATCGAGTGCCCTTTCCCCAAGTGGATGCACTGGGCTCTGATTGCTTATGCCGTCACCTTCATTGTCCTGTTCGCCAACTTCTATTACCAGACCTACAGGCATCCAAGAAAGGAGTCCTCTAAACCTGGCAAAGTTGCTGTCAACGGTGCCGCGACTGCTATAAATGGGGTgagcaagcaagaaaacaaactggtGGTAGAAAATggaaggaagaagaagaagggaaaaGCAAAACGGGAATAAAATGAGTAAGCAGGCCTTACCAAAGCAAGTGGCTTTATTAACCAAGAGAATCCCACTTTTGTAGGCATGAATggaaaaggtttaggcaggacACAGGCTATCTGAtgattttgtgttcattttaaatgtgaccAATTGGGTAAAGGGTGGCTATTGTAATATGGTGAATTTTGAGACGTTTGAGGTTCAAATGGCCGCAGGATagttatattaacatttatttcaactgATAGTGTTCTCTTTGTTTATGCTGGTTTTCGATTTTGAAGCAATTCAGGGAACCATTTTAAAGAGACTGAAATGCAGTAAACGTGTGCCCCCAAGTCGGGAATAAATTAGTTTTACCTGCTCTCATTCTTCTtctgaaaagcaaacaattgaAGTAGTCCTTCTGTTGCAGCTGTGATGAAAACAATTCCATTTTTAATCACTTATTTTCCtcatagattttgttttgtttgtttgtatttttaagttgcatatcattatttaatgttccagtattagaattaatttaaattgttttattgaatcAGCCCGATATTCTGTCATGCTTGCAAGGGCAGTTCTTGCTGTATAAAAAAGGGATATCCTCATACAGGCATCACCAAAAAGTGGTGTGTTTCAGTGTCGCGTCTTGATATCAAAAAAGCCCTCAAACCTCATCTGGGGTGCTGTTAGTGGATAGCTCATCTGTGTTCTCCAGCTCCACGCTGTATTAAGCAGTGACAGCAGGGTTCTCTGTGTTTTCTACattattgatattttgttttctccttctgTGTAGAACACCTCCAGTTGAACCTTGACAACAAAGAGTGATTGCTACTGTGTCATGTGTAACCAGGCCTCAGAGGTCAGGACTACCATGCAATATAGTACTTTCCCAACCtgctatatttttgtttacGGATTATGttgccccacccccccactctgtGATGCAGTAGCTAGTGTTGAAATATAGGTTAGTTCAGGGGTGCCCACCAGCCTGCTGAGATGTAGGGGTTTGCTACAGCCTGCTTTGTAATGATTCAGCTGAAGTAATTAACAATTGATTAAACCATAAAAGGCTTGACATGCTTTCCACCAGAATGGATCTGAAGCGGCTGCAGTGGGTGTGTGGGGACCCTTGGGTTAGATGTATGTTGATTCATGGAGAACTATAAAACCCAAGCATTTTTTTACCTGCAgatataaagtatatttattgGGCTTTTCAAACTGTAATATTCTATCACTGCTACAGACCTAAAGGGTGACTGGCAGGCATGGGCAGAACTGGACGACACAACAGATGGCCATGTGTATTAATGGCCAGTTCACTGTGATGCTGGTGTTTTATCGATTTCTACTGaagggttaaaaaaaactgtgagaTGGGAAATGTGCACCGACTGGTCCAGCTTCTTTGTGAAATTGTTACAGATAGATTCAATTAACATGCTGCattctttgttctgttttttttttttttttttttaggaagcAAGAGGCATTATGATATTTACAATTTAAGGGCAAATGTACTAAAATATCATTGGTAATAGTCTTGACACTGTAGCCTGTTATATGTACTATAAAATGGCATTGTTATGAGTATGGAGGCAAGATTCTGCCTGTTCTCATCAGAGGAACATTTGTCCTGCGTTGTAATTGCAGCCTGTTACAGTGCGTCACATTATCTACAGATTAGAACAATTTGTGACTACTGTAAATATGGGCTGTACAGTGACACGGTAACAAAGACAATATAGTCGCTGTCCACTGCACCTAGACCATTTGGAAATAGTTGTTCAATAACTGTTCAAGGTAGGAAAGGCAGGGGGCATATCAAAATTAATCATTTGCCAAAATTAGTGGGAATgcaaaaaaaactgtcaatttTAAAGTACTATAGGCTTCACATAAaatacagtgtagtgcagttcTGTTTACACAATATATGCCTTCTGTCCCTGTATTgcaagaaataattaaaaatggtgACAACACTATCACCTGTATTATCTGCAGTTCGATGTCTTTCTTTGTATGACTCCATAGTTTTATTGATCACTGTGCACTGCTACGTTGCTAAAATTGTGTATTTCCAAACCTGGTTACCAGTGTCATGTCAACCTTGGTACTTCATCACATTTGTATACTGTAAGCAGAAACTTTTATGTTTCCCCAATGGAGTTCCTTACAATTTACTGAAGTGAGGAAGTgtaaggtatttttttaatgctataTAATAGAGAAAATGACTGCTGAAGAAAATACAgaagttacattttttaatgacaaaCATTCCAGAACTTCAATCTTTAAAACGCctgcaaatatttaatgtttgaagttgtgttcatgtttgtatgtacttatttatgatgattttaattattatattacctgtaaacaaacataaacTGGGTCAGTTATACAGTGCAACCATTTGAACTACTATTATAATACAAAGGTTAATTGTTGCATTGCTTAAACTGTACAAAACACTATTTATGGTTTAAGATGGCATTTTGGCATAGGTGTTGTATTTTGAGATTCATACATGCTACATATTAGTAGTGCTGGGGAAATTTGATGGGGTACAAAAAAGACATCACACTGAAATTTTTAAATCGTATCAACATTAGtatttctgttgctgtttttttggttATAATATAaattttttatattcaaatcaaTCTGGATTGCTTTTATTCTTcctagaaataaataattactccTTTAGCAATCAGGAACCACTTTCATATGTTTATGCAGTACAACATACATCAAAAGTAACACTGCTAATATCATTTAGGATGGGAAAGCACTGCTGTGGAGTGCATAGTATAATCATGACACCCCCTATCCTTATGCTTAGTACATTTGGCCCTTACTTTAACTATCAGTGCATTACCTTGATTTCCCGTTAAATAGATGCAATAATGTTGCACCTCATTGCTGCGCTGCCTGAGACAGGGGAGTTAATGCTTTATGCATGAAtctgtgatttgtattatttttatgtaaatgttttgtggaAGATCTCAATCTGGCAAGAATAAAAGTTTTAGTCTATAACATTGCAATCTTTTGTTTCAATGTTTACACTAAATAAATTTGAACATCTTAATATGGGTTCCATCTGTGTTGACTACAGcaattttaagtttgtttttaattttattatccAAAGAAAGCTAAAGTAATTATGGAAATGTAGGAGAAAAGTTACATGCTGTAACAACAGTAGTTGATCTATAAAATAGTCGGGAATATTTGAGTGCTGCACAACTATTCATATAAATAAGGCAGATGTCATTACATCTTGAAATCCCCAGGACAATTTTGCAACTAACTACGCATTAATGGCTATTGTAAATTATGTTGGATAAACTTCCTTTTTAGCCAGCCTCAAGGTGAAATTATGATAAAGTAACATTTCTGGTTTTCTATTACCTGGTAATTTTCAAGTGGAATTCCtctattatttttacattgtgtctTTTAAATTTCCCCGTGTTATTTCAAGATGGCATATAGAAATGGTGACATGAGGGCATGTTTATGATACgtgtatatttaatacattttccatataaTGTAGAGAGTTTCCCAAAAACTATTATATGAAGATTAAATGCTTgctcaattaataaaaaaaaaaatcttctgaatactgaatatctgaactttgaattaaaaatgccTCCTATACAACTTGAATTTTAATTCTGATAGTACTgcgtattgttgttttttgttgttgttgataaaCTACAGAAATAGTAatcacaacaataaatataatgtacttGTGACTATTTATATGTAATTTGCATAGCTCTGTCTAATTCATACAATAGTAGGGGATATTTAACTGACTGTATAAAGGAGTACACTGCAGTTTGAGGTAACTAGTACATGTATTTACACAGAATGCAGAACTAGGCAATTTAAATggtacttttaaataattattctaaaaGTATCAAGGGAGCAGAACGAATTGATCTTCTGTTGAAAATGGTTGAAAGTCTTtgggaaaacattattttaaagcattaagaCTCAGAAACTGCTTTAGCTTTTCATACTGTAACCATACTGTTAATCAGTGTACCATCCAGCCATCGTAATGCATGCAGTTATTACTGGACATTCTGCAAGAGTGTATTGTGAATACAGCACAGTATCTTGCATGTATATTTAGGGCATTGTTGTTTGAAGCGCAGTTTAATGCAGTTTAATGATATGCTCTGAGCAACTGGCAGCAACTTTTTATCATCTGAAATTTCACATTTCTCATGAGATTGAATAAAAGTGGTTAACCCAATATATTCTGGTAATGAGGAAATTATGCATTCAACATGAATGTCAACGCACAATGTCAAGGAACAGTACAGACAATTACCTCAGATCAACTTTCAGAGCAACTACAAAATACTAAATTGATTCTaccatatatacatttcagtcaCTTGACAAGACTATGGGTTGTCTACACAATGTGCTGAAATACTGGTTTGTTTAAGGATGAAGATATCATTTTGTAGcctacatatactgtatatacagtgttaatcattattttcagattcagtTTTTCTAAGACATTGACAGCTGAAGAAAACTACTTTTAAATCTGTATGTAAATATGGATTTCACAATAACATGGCTCCATGGCTCTTCTTTGCgttttttgttaatgtgttgTATTTGCTGTGCAATTGAGATTTGTAAATTTCAGACTTGTATTATATGTAAAATTCCTTACAATTGTCAAGACTAACATTTTGAAAggtgatttattgatttaagaaatggatttaaaaacttGACCATAATTCTGTTACAATTGGctcattacaatttaaataaacagaa

Function

symbol description
elovl4 Predicted to enable fatty acid elongase activity. Involved in fatty acid elongation, saturated fatty acid and very long-chain fatty acid biosynthetic process. Located in endoplasmic reticulum. Is integral component of endoplasmic reticulum membrane. Implicated in corneal dystrophy and spinocerebellar ataxia type 34.

NR:

description
PREDICTED: elongation of very long chain fatty acids protein 4-like

GO:

id name namespace
GO:0042761 very long-chain fatty acid biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10249 ELOVL4; elongation of very long chain fatty acids protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003995 True 6061 mRNA 0.36 7 28699380 28715591

Neighbor

gene id symbol gene type direction distance location
AMCG00003997 LOC105908893 coding downstream 65149 28609945 ~ 28634231 (-)
AMCG00003996 NA coding downstream 100762 28593023 ~ 28598618 (-)
AMCG00003987 NA coding downstream 320651 28378241 ~ 28378729 (-)
AMCG00003986 atg5 coding downstream 368778 28272497 ~ 28330602 (-)
AMCG00003984 prep,LOC100698444,LOC106571155 coding downstream 542446 28127912 ~ 28156934 (-)
AMCG00004002 fam46a,fam46aa,LOC100698511,LOC107378903 coding upstream 240702 28956293 ~ 28958298 (-)
AMCG00004000 LOC104961995 coding upstream 263436 28979027 ~ 29002504 (-)
AMCG00004001 NA coding upstream 330540 29046131 ~ 29081592 (-)
AMCG00004004 LOC100304755 coding upstream 393354 29108945 ~ 29118705 (-)
AMCG00004005 NA coding upstream 475089 29190680 ~ 29197175 (-)
G4966 NA non-coding downstream 356 28698475 ~ 28699024 (-)
G4923 NA non-coding downstream 227611 28471562 ~ 28471769 (-)
G4922 NA non-coding downstream 228963 28470190 ~ 28470417 (-)
G4921 NA non-coding downstream 229528 28469574 ~ 28469852 (-)
G4900 NA non-coding downstream 329398 28367999 ~ 28369982 (-)
G4982 NA non-coding upstream 177091 28892682 ~ 28893032 (-)
G5012 NA non-coding upstream 259387 28974978 ~ 28975267 (-)
G5032 NA non-coding upstream 292100 29007691 ~ 29010809 (-)
G5076 NA non-coding upstream 467501 29183092 ~ 29269921 (-)
G5181 NA non-coding upstream 1386854 30102445 ~ 30102654 (-)
AMCG00003967 LOC107095448 other downstream 1829802 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 2700752 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 2797768 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 4403134 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 4941584 23740585 ~ 23757796 (-)
AMCG00004006 NA other upstream 609150 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 1469027 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 1558215 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 2098190 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 2254088 30969679 ~ 30973496 (-)

Expression


Co-expression Network