AMCG00003997 (LOC105908893)


Basic Information

Item Value
gene id AMCG00003997
gene name LOC105908893
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28609945 ~ 28634231 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003997
ATGAACCCTGCCGCAGGCGGCGCTGCTGATTCTCGCCAGTCAGACAAtagcaacagaaaacaacatcGGGCTTCATCTCCAGCTAGATCCAGAGACGGCACCTCCAGATCAGCTCCGAAAACCCCAACACTGTCCAAATCTGCGGCACTGAAGCCGGTGGTGAAAAATAATCGCAGTCCTAACCAGTCGCTGGCAGCCGTGGTCAAGGAGAAGCTCTCCCCGAAAGGTGCGGCGGCTGTCCATCCGGGTGGTGCTGAAACTAATGCTGCCAGTGCGAGCAGGGCGGAGGCGAGCAAGAAAAACGAGGAGCGCAATAACCCTTCAGTCGAGTCCCGTTGTACGGATTTAACCTGCATTAAAGGGGATTGTACTCGTGTGGTTTCCGACCAGCCCGGTTCCTCCAAATTGTCGAAAGGGAGAGCGAAAAACCAGAAAGGCGCAGGAGAAACCCCAGCCAGCAGCTCCAAACAGAACAGTGCTAATTCCGTGGGCTGCGGGCCTATATTCTGGAAAGAAGGATGCTTACAGTCTGAATTAATCCAATTTCACATCAACAAAAGATTAAAGAAGGGTGGTAAAATGcacaccaaaacaacaaatgccCAGGCGGCGGAGTCGCAATTGGAGGCATCTCCTGAGGGTGTCAACATGGAGAATGTGACACAGCAAGATGAGAACCTCCAAAATGAACTAGAGAAACTGTCCGAAGAAAATGAAGAACTCAAGATTGAGATTGAGGAGATGCGGACCGAAATGGACGAAATGAGAGACACTTTTTACGAGGAAGATGCCTGCCAGCTGCAGGATATGCGTCGAGAGCTGGAGAGAGCCAACAAGAACTGCCGGATCCTGCAGTACCGCCTGCGAAAGGCCGAGAGAAAGCGCCTGCGATTCGCGCAGACCGGGGAGATAGACGGCGATCTGCTGAGGAGCCTGGAGCAGGATCTGAAGGTGGCCAAAGATGTGTCAGTGAGGCTACATCACGAGTTGGAGAATGTGGAGGAGAAACGAACAAAAACCGAAGAAGAAAATGAGAAGCTGCGACAGCAACTGATCGAAGTGGAGCTGTCACTAAAAAGAAGAGGAAGCAAAGATTTACAGAAGTCAGATAAAAAGAATGTGCCAACACCAACAGAGGAAGACAACGAGGACTTGAAGTGTCAACTTCAGTTTATCAAGGAAGAAGCTACACTAATGAGGAAGAAGATGGCAAAGATTGACAAGGAGAAGGACAGACTGGAGCACGAACTTCAGAAGTACCGCTCCTTCTATGGCGACCTGGACAGCCCCTTACCAAAGGGTGAGGCAGGGGGACCTCCCACTACAAGGGAGGCTGAACTGAAGCTGCGTCTCCGACTGGTGGAAGAAGAAGCCAACATACTGGGCAGAAAGATCGTAGAACTGGAGGTGGAGAACAGGGGCTTGAAAGCCGAGCTGGATGACCTCCGTGGGGATGAGTTTGCAGGGGCCCTCAACCCTTCCTTCCGGGAACAGAGTGAGTCCATCTCGGACCTGAGACAGCAGCTGCAGCTCGTGGAGGATGAGGCGGAGCTACTGAGGCGCAACTTGGCCGATCTGGAAGACCAGAACAAGAAGGTCACGACGGAGCTCAACAAGATGAAGTACAAGGCTGGCTCACACGAGAGCTCCCGGCACAGCGACAGTGCCAAGACAGAGGCCCTGCAGGAGGAGCTGAAGGCCGCCAGGATGCAGATTAATGAGCTGAGCGGCAAAGTCATGCAACTGCAGTATGAAAACAGGGTTCTGATGTCCAACATGCAGCGTTATGACTTGGCTTCCCACCTGGGCATCCGAGGAAGCCCCCGGGACAGCGATGCGGAGAGTGATGCTGGGAAAAGGGAGAGTGATGATGATTCCCGCCCACCTCACCGGAAACGAGAGGGGCCCATCGGCGGAGAGAGCGACTCTGAAGAGGTACGCAACATCCGCTGTCTGACGCCCACAAGGTCCCTTTATTCTGCTGAGGGGCGTTTTTTACCCAAAAATTTCAAAGACCGCCAGCAGATGATAGACATCCGTATGGAAGCAGAGCGTCTCAGCAGGACTATAGACCGGTTGATTTCCGACACCAGCACCATCATAACCGAGGCCAGAATTTACGTGGCCAATGGGGATCTCTTTGGGAGGATGGACGACGAAGACGATGGCAGCAGGATACGAGAACACGAGCTGCTCTACAGAATCAATGCCCAGATGAAAGCCTTCAGGAAGGAGCTGCAGAGCTTCATAGACAGACTGGAAGTCCCGAAGTCTGACGACAGGGGAGCCGAGGAACCACTGTCTGTAAGTCAgGAGCCGCTTCTAAGGCTTTAGGATCACCAGGGCTGGATTCTCCATTCAAGACGACTACATTTTAATGAGTTTCAAGATCAGATAGATGTCTTAAAAACAGGTAAGACTGACGCATTGGTTAATTGCTTAATAGAAGTGAATATACGccaatatttagaaatataatgaATTTACTTTATTAACAATATGTAATTTCTGCATACAAAATATGCAAGTGAATACACTGAATACTATGTCCATTGAAGTGAtagtgatgttttgtttttgtttactgcttttctttttttaccatATTGTTGATGCCCTGAATTTAGCCTAGATTGTGCCATTGATTGCGATAGGTGGCTGTAATGCAAGTGTTATTGGTGACGACTTGTTTGCATAGGGTTTAATTCTGCATTGCAGTTTCAGCTCCCCGTGTATTTACTTTCCCGCTGCTGAAGTTACGATGCATGGTTACAGTGGGATATAAATAATCTCCAGCTCTTACATCACGGCATGTATTTTTGGTGACTCGGGGGCGGGAGGTGGTCGTTATTGGGTGTCATCTTCAGTTTGAGGCAGAATGCATGCCCTTCTGAAGTCAGTCGGGGTATTGTGTATCGGGGGGTGGAAAAAAAGCTTGCATTGAAACATTATCCGATACAGCCCACGCAGTGCTGATTAGAAAGTGCAATGCAGCGTATAAGATACCTATAGATTTCCCAAAAGTTGTGCACTAGTGTGTGATCGATTGACCTTCATGCTCACATGGATAGAAACCAATGCGAGCCGTGCGGACACTGCTGAGAGGGAATGGCAGGCTTTGGGTTACGGGGCTTTGCCAATGAAGACGGACTCGACCCCCCCGAGTCACAGCCGGGTGCTGGTTCATGTTTGCCTGGGTCTGTGTGAGAAATGTGGAGTGCGTTTGGAAACGGGGCAGGTGTGCACCATGGCGGCGGCGGCTATGTGACCAAGGCGCCGGGCTGGGAGTTCGTGCCCCTGTGCCGGCTGGACCAGGAGAGCGGCCGAGGACGGGGCCGCACCCCGGTCAGGACTTTATCCTCCCCCGCCGCCGTGGCCCACTTCTATGAGGAGCCCAGACCCGGACTGGGGGCAGCATCCGAGTCGGCGAGTAGGGCGCAGGGCGACGGGCACGACGTGCAAACCCAGTACTGCAGactgaaaaggaaatgtgaaGAGCTGAAGAAGCGCCACGACCAACAGAGAGCGGAGTGGCTGAGGGACAAGGAACTGCTGTTGAGACAAGTGGCTGACATACAAGTAATTCGATGAGAAGAAACGTTGAAAGCACTGAAGACGCGCGGGTATTGTTGGTGTGAGAAAAGGTATTAGcgtctttgtctctctcttgcATTTCGTAGGGTGGGGAAAACCGGAGGATTTTGTTGGGTCTGAAGTCCGTTTTAGAAGACGTCCAGTCGGAGTTGAGGAAGGAAGAGGCGAAGAGGGCCGAGCTGCAGCTGCAGTACACGAAGGACCGCTGCACCTGGGAGCTGGAGAGAGCAGAGCTGAAGTGCCGCATTGTGCAGTTGGAAGcgaaaggaaataaatactaCTGCGATAAAACTAGCCCTGACCCAAAGGAAACACTGAAGAGGGAGCGAGAGGAGCAGAAGAGGCTGCTGGCAGACACCCACACCGCGGCCATGGACTTGCGCAAGCAGCTGGAGCACAGCGAGCGCGGCTGGGTGCGGGAGAAGGTGGAGCTGCTGGAACGCTTTGACAGTGAGAGGAAGGAATGGGAAAGTCAGTTGAAAGACATGCAGATGAAGATTGAAGAGttGTATCATGAAGTGAAGGCAAGACGAGAGGGCAGCGTGAATGGGAAGGAGCACGGCTCCCATGATGAAGTGTTAAGGCTCGCTTTACATTCCTCCAGTTCTGAATCCAGCGTCCTTGGTGGCCTTGCAGATCAGAAACTTGACTGCCCCAAAGAGAGTGCAGCCAAGGTGGAGGAGATTCTTCAGTGTAATATCGGACAGGCGTTAAACAGCATCTCGATGTCGGAGGGAAATGAGCCCTACACAAATCCCTTTAATAACTTTCAAAATAACAACGGCTTCCCAAGCAATGTGACACGTGGGaatgagaaaaagaaatacaccaGTGCTCTAAATGCGGCATTAAAGGAAATTGCAAAAGTAAGCGAGGAGCTGTGCAGCTATCAggatgaaataaagaaaaaatccaCTCATGGAAGGAGCAGAACTTCATCTATTTCATTTTTGGAAGAATTTGAGGAAGCCCACAATGTAAAGAACAGAGGTCATCCAGGCTTTCAGTCCAGGAGTGGAGAGCCAGCTCTGAGCTCTGAGTGGTCTGATGAATTCAGCATCACAGAAGAAGAGAACAGGATTAACTGGAGCAGCATGAGCAGGGACCTGAATGGTAGCATTGAAAGTGAAACAGACACAGGGGCTAAACTCTCTCCAAGGAAGAAAGAAGCCCCACCAATTCCTCCTCGAACAACATCCTGGTACATTACCGGTTCAGCAGTCCCAGAAACAGCAGAGCTTCCAGCAGTGGAGATAAACAAGTCCCGGGAACTGCAGGAAGCATTCAGTGAAAGTAAATGTAATAGTCCTTCAGTTCTAAAAAAGTTTGGAGCCATGCTGCAcgaaaatgaaggaaaaacacTTACAGATTCTGGAGTTTTTACCCACATAGTGCCTGCCGATTCTAAATGCAATATTGGCTGTTGTCACAGTAGGTGGTCATGTGATGGAAGTAAGTTTGGTGACGGCAATTCATCCACTTATATGCCCGTCCAAAAAAGTTTTTCAGACGTCAATATAATGTCATTTGATACAGACTCTGAAAGCGGGTCATTTGATAACCCCAAGTACCCAAATGGGAAATTTCAAACAGCAGACAGAGacattacaaaacaatgcaACCCATCTTCTAGTTCAGCAGAAATTGGATATTCCACTTCAGCCACACCTACGTACATTGAAATGAACAGGCCAAAGAAAAATGAGACTTTGGCAGAGAAAACTGCTGAATTCAACAGGACTCTGTTCCAGGCAGAAACGGGAAATGTTTTTGAAGAGGAAAATGCAGAGCTTGCTGAAGTCTGTGCAAATTCTATACCCAATGGTTTGAATGTAAACTACTCAATGGACACTAAACACTTCAATCCAGATCATAAAGTCTCCGCCTACATGGAATATGCACCTAACAGTACCAGAAATAATGCAAGACTGGTAACCTGGGGCATAAAGAATGCCTGTTCTGTCTGGGCTGGTAATGATAATGGGCAGCAAGTTTTAAATGAACACCTCTGGAGACCAAGCAATTTAGCTTCATGTCCTCCGCCAACAGATGCAAGATCCAATTACAGAGTTGTTGAAAAGATTTTGCAGGGCTATGAAAATTCTGTTCCTTCCCACTGGAATTCGAACTGTGGTTTTTATCCACAGCAGCACCATAATTCTGGGTCTCAACAAGGTCACCCAGACAACCTGATCGAGCTCTTAGACATGCTTCAAATTGAACAGGACTCTCATACCAGTCAGAGACTCTGTGAAATACCTTTCAGGCAGACAACCACGCACAGGGATATACAGTTGAATATACACAAGGGCAATCTAGACTGTCCACCTGTCTCTACGAAGAAGAGTTTTGCTCGACCTGCCCGGCCAGCACACCGGCGGCCTCCATCCCGCTGGGCCACGCGCTCCACCTCTGCCTCCACAGCCCGCAGTCTGGCGTCACACATACGGACTTATTCCTACTCCTGCCACTCGGACACTGACATTATCTGAGCCTCCGGGGGAATCCCGACAAACTGACCGATACCCACCACTGAAGAAATATGCCTTGTCGCccttttaacatgttttttatctTCTGTATATACTTGACTGTTATTTGTACCGAGCTATTAAGTGCTTTAATTGTGTACCATCTGCGTACACTGTTTTTAGGATGCATTATGTAAAAGATACATGcgcttaaaagaaaaaagtctcCAGGGTTTCAGTGGCCTACTGTACTTCTGTACGTTTAATCTCAACGTTCTAGAAAGATTATTTTCTCATCTGTTTACTTAGTCCTATCATCGTAGACTTCTGTATATTCTAAACCACTCTGTCAGTGGCAGTCATTTCATTGTTACCTGCATGcttatgtgtttgttgttgcatGTGTCTGTGGTTGAGTATATCAAACTGGTAGGTCATTATTATTGACAAACGATAGACCAACCCATTATAGTACTTTTAATTAGCaactttaataaacatttaaatatattgtgtcgTTAAACATGATTAtgataaaaactattttaaatgtcatagtTACTGGCAGTGGAACATGTAATGAGAGTGACgtgttttattgtcttttttt

Function

NR:

description
PREDICTED: uncharacterized protein LOC105908893

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003997 True 6675 mRNA 0.48 11 28609945 28634231

Neighbor

gene id symbol gene type direction distance location
AMCG00003996 NA coding downstream 11327 28593023 ~ 28598618 (-)
AMCG00003987 NA coding downstream 231216 28378241 ~ 28378729 (-)
AMCG00003986 atg5 coding downstream 279343 28272497 ~ 28330602 (-)
AMCG00003984 prep,LOC100698444,LOC106571155 coding downstream 453011 28127912 ~ 28156934 (-)
AMCG00003981 NA coding downstream 483401 28107472 ~ 28126544 (-)
AMCG00003995 elovl4,LOC108434897,LOC105908900,LOC103388604 coding upstream 65149 28699380 ~ 28715591 (-)
AMCG00004002 fam46a,fam46aa,LOC100698511,LOC107378903 coding upstream 322062 28956293 ~ 28958298 (-)
AMCG00004000 LOC104961995 coding upstream 344796 28979027 ~ 29002504 (-)
AMCG00004001 NA coding upstream 411900 29046131 ~ 29081592 (-)
AMCG00004004 LOC100304755 coding upstream 474714 29108945 ~ 29118705 (-)
G4923 NA non-coding downstream 138176 28471562 ~ 28471769 (-)
G4922 NA non-coding downstream 139528 28470190 ~ 28470417 (-)
G4921 NA non-coding downstream 140093 28469574 ~ 28469852 (-)
G4900 NA non-coding downstream 239963 28367999 ~ 28369982 (-)
G4838 NA non-coding downstream 504965 28104609 ~ 28104980 (-)
G4966 NA non-coding upstream 64244 28698475 ~ 28699024 (-)
G4982 NA non-coding upstream 258451 28892682 ~ 28893032 (-)
G5012 NA non-coding upstream 340747 28974978 ~ 28975267 (-)
G5032 NA non-coding upstream 373460 29007691 ~ 29010809 (-)
G5076 NA non-coding upstream 548861 29183092 ~ 29269921 (-)
AMCG00003967 LOC107095448 other downstream 1740367 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 2611317 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 2708333 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 4313699 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 4852149 23740585 ~ 23757796 (-)
AMCG00004006 NA other upstream 690510 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 1550387 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 1639575 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 2179550 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 2335448 30969679 ~ 30973496 (-)

Expression


Co-expression Network