AMCG00003999


Basic Information

Item Value
gene id AMCG00003999
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28731909 ~ 28751998 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003999
ATGGCGGCCGCGGCTAGGTTGTTGAAAAGTGCTGGCACTTGCAAAGCTTCAATCAGCAATATTAACAGTGCTCTGCACAGTCGTTTTGGGACTGCTTTACTGAAACCACTGCCCAATTATGCCCCCCACGCTACAGCAGAGCGACGGCACGCCGCACACTTCACCTTCCACCCGGACCCGGAGCCGACTCAGCATGGTCAGACCCAGAAGATGAACTTTTTTCAGTCTATAACAAGTGCCTTGGACAACACCCTTGCTGATGACCCCACCGCGGtcaTCTTTGGGGAAGATGTTGCCTTTGGAGGTGTCTTCAGGTGCACTGTTGGTCTGAGAGACAAATATGGTATGTACTTCACCCAAGGTTTAACTCGCATTGTCAACGAGGCTGCTAAGTACCGGTACCGTTCTGGAGATATGTTTGACTGTGGCAGGCTTACCATCCGAGCGCCCTGGGGCTGCGTGGGCCACGGCTCCCTGTATCATTCTCAGAGCCCTGAGGCCTTCTTTGCACACTGTCCAGGACTCAAGGTTGTTATACCTAGAAGCCCGGTTCAAGCGAAGGGTCTTCTGCTGTCATGCATATCGGACGATAACCCCTGCATATTCTTTGAGCCGAAGATCCTCTATAGAGCTGCAGGTGAGCATGCTGCCCGTCAATTAATCAATACTCCtcagaaaagtgtttttcatgCAGATACTTGA

Function

GO: NA

KEGG:

id description
K00167 BCKDHB, bkdA2; 2-oxoisovalerate dehydrogenase E1 component beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003999 True 702 mRNA 0.52 5 28731909 28751998

Neighbor

gene id symbol gene type direction distance location
AMCG00003998 LOC105908890,LOC105419921 coding upstream 876 28717782 ~ 28731033 (+)
AMCG00003994 NA coding upstream 33142 28689888 ~ 28698767 (+)
AMCG00003992 rnf146,LOC107735261 coding upstream 140316 28587831 ~ 28591593 (+)
AMCG00003989 NA coding upstream 352736 28373146 ~ 28379173 (+)
AMCG00003985 NA coding upstream 361935 28354515 ~ 28369974 (+)
AMCG00004003 NA coding downstream 330095 29082093 ~ 29108404 (+)
AMCG00004009 NA coding downstream 390764 29142762 ~ 29184704 (+)
AMCG00004007 me1,LOC107597132,LOC107704946,LOC107587764,LOC107716854,LOC107730934,LOC107700750 coding downstream 507962 29259960 ~ 29265240 (+)
AMCG00004008 me1,LOC106583951,LOC106605032 coding downstream 553206 29305204 ~ 29321613 (+)
AMCG00004010 NA coding downstream 628585 29380583 ~ 29391128 (+)
G4917 NA non-coding upstream 262965 28466917 ~ 28468944 (+)
G4837 NA non-coding upstream 626202 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 954250 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 955467 27721460 ~ 27776442 (+)
G4804 NA non-coding upstream 1147875 27583571 ~ 27584034 (+)
G4981 NA non-coding downstream 140686 28892684 ~ 28893031 (+)
G5005 NA non-coding downstream 200555 28952553 ~ 28953065 (+)
G5085 NA non-coding downstream 602523 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 932229 29684227 ~ 29685543 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 945669 29697667 ~ 29699224 (+)
AMCG00003993 NA other upstream 47928 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 146235 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 266263 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 332168 28379811 ~ 28399741 (+)
G4831 NA other upstream 628698 28062363 ~ 28103211 (+)
AMCG00004011 ccnc other downstream 775416 29527414 ~ 29541358 (+)
G5245 NA other downstream 1519212 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 1544869 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 2135997 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 3648407 32400405 ~ 32402383 (+)

Expression


Co-expression Network