AMCG00004000 (LOC104961995)


Basic Information

Item Value
gene id AMCG00004000
gene name LOC104961995
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28979027 ~ 29002504 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004000
GTAAGTctgtcagtgttgtgctgtgagGTTCGGAGTTCTCTGGAAATTTGAAGTGAAACTCTGCCAGGATCTTATATTTTCAGCACAGTCTATACAATATTGTAATTGACAATGCCTTTGCAGACCACTACCGTCAAATACAGCCAATACTTCTCTGTCACCTTCAACTAGCGGCTGGTACTCCCTATAATTATGGAGGCATAAACGGATTTGAGTgcttgggggggaggggggaggggataTTCCCCTTTGCTGGTTGGCTTGTGTGGAAGGAATTTACTGAAGGTTGTCAGACTCTTTTGCCTTTATagaaaacttgaaaaaaaacacacaaaaataacatttaaaaaataaatatatatttatacattttgtaatttatttatttatttatgctgtcTAGCGTGCCAAACATGCTCATCGGCTGTGTTCTGCATGTTGCAGACTTATCATGGTCGTATGAAATGAACTAAGAAAAGGGCCACGGGGTTGCTAGGGTGCAGTGGAATTTCAACACAGGCACAATTCTAGCTTCCTgatgagattttttattttattttgtatttgttttgaaggATTAATTATGAATTGCCATTAATAATTGTGTGTACAGTATAAAGAGGTTGCTCAGTTATTGTTCAGTAAGAGGGGGTTTGCACTCAAGGCATTTCAGAATGAGCCTGATGCCCCCAGACTGCACTGCCAAGTGTCGGTCGATTCAGCATGCTCAGGACATCATCTCGGCTCTGACCAAAGGCACAGAAGGCCAGCTCAGGGCCTTTCTCTCTGCCCATTGCCACAACGCTGCCACGCTGAAGGATGACTTCGGGAGGACAGCCCTACACTTCGCTGCATCACTGGGCAAGAAGGGTCTCGTAGACTGGCTCCTGGCATTGAAAGGAGCCGATCTGGGCGTGAAGGACAAGGAGTCTGGGTGGACAGCCTTGCACAGGAGTGTGTTCTATGGCCACATCCACTGCCTCATGTCCCTTGTTAAGCATGGAGGGAATCTTAGCACCCAAGATAAAGAAGGGCTTTCGGTTATGGATTTAACTATGAAAGACAGACCAGCGCATGTTGTGTTCCGAAATACTGATCCTACAGAAGTCTACACATGGGGAAATAACACTAACTTTACTCTGGGTCATGGAAATCAGCAGAGCAGATACTACCCTGAGCCTGTGGATCTGTTTGCTAGAACTGGTGTCTACATCAAACAGGTCGTGTTGTGTAAGTTCCACTCAGTGTTCCTGTCCCAGAAAGGTCAAGTGTACACCTGTGGGCATGGACAAGGAGGCCGACTAGGGCACGGGGATGAGCAAACATATCTGATTCCTCGGATGGTGGAGGGTCTAATCAGCCATCACTGTTCTCAAGTGGCTGCAGCCAAGGATCACACAGTGGTGTTGACAGAAGAAGGATATGTTTATACTTTTGGGCTGAATACCTTTCACCAGCTTGGCATTGTACCACCTCCCTCAACAAGTAATGTACCAAAGCAGGTTTTGTCCAAATCTCTCAAAGGAAGGACTGTAATTGGTGTAGCGGCGGGCAGGTTTCATACTGTCCTTTGGACAAAAGAAGCAGTATACACTGTGGGACTCAATGGCGGTCAACTTGGTTATCTTTTGGACCCGAATGGGGAGCGTTGCGTGCCAGCTCCTCGTCAGGTGTCTGCATTGCATCACAAGGACATCTCGGTCTCCATGGCAGCAGCCAGTAATGGAGCCACAGTCTGTGTGACTGAGAAGGGAGACGTTTACCTCCTGACTGACTATCAATGCAAAAAACTTGCTTCTAAGCAGCTCAATCTGAAGAAGGTTCTTGTAACCGGTGGCTTCTTGGACCAAAGGGTTGATCCTCAGACTCTCAGAGAGGGTGGTGGTGAAAAAGTGTCAATCCTAGCTCTGGATCAGGCTGGAAGAGTGTTCTGCTGGAagtcttcaagcagctgtgtGAAGCAGTGCCGATGGGCATTCGGACGTCAGGTCTACATGTCTGATATCGGCCTcagtaaaaatgaaatgatgttCGTTACTCCAGAGGGAGAAGGCTTTTCAGGGCAGTGGCTGACAGACTGTAAGAAGAGCACTGAAAAAAAAGATGATGCGCCAAGTCTGGGAAGTTCTGCAGGGCTGTCCAGCCACATGGATGTCAGCAATGCATATGAGAAAATTAGACTAGAAAAGCTTCCTCATGTTCATCGGGCTGTCAGCATAACTATGGATTCCAAAGGACGTAACTTCGGTGTCCTGCAGTCTGATCCCAAGACgagcCTGTATGAAATCCCGTCAGTCTCCTCACCTACGTTTTCCAAAGACTTCCAGAGCCTGTTCGCTGAGGCAGAAGAAACCGACAATATCCATGATGTGACTCTCCAGGTGGGCAACAGGACATTCCCAGCTCACAAGTATGTCCTTTCCATGAGGTCAGACTTCTTTCGGAAGCAGTTCTACCCCGAGTCTGATCAGGTCGGATTGCCAGACATTCTCCGAACGGACGAGGATGCCGTGGGTTGTGACCGTTTTGTCCTGGAGAAGGTCCAACCGGATATGTTTGAGCACCTCTTGCAGTTCATTTACACGGACACGTGCAACATCCTCTCACACGGCTACAGAGCCAAGTTACCTCgagaggagaagaaggaagaTTACCTGGACCCGCTTATTTGTAGCCTGAGGAAGATAGACTTCCATGAGGGACTGAAAGACAAGTCTGCCTATGAGGTATACCGGGGCTGTCAAGTTAATGGTGATGGGGAGAAACCGAAAACCAAAGCCAAAAACAGTAAGAAGGGGAAAGGGGCAAGTGAAGAGGTCAACCCGGTGAAAACCCTGCAGGGCCTGGCAAAGAAATTTGGCGTTAATGGCCTGTCTGCACGGCTAGATGGAGTCAAGTTTGATAATGGAAAAATCAATGTTGTAAACAAGAAGACAGGAAGCAGACTACGATTAAATCAGAAAAAGTGCTCGTACCTTTGTGACGTGACGTTGAGGTCTGAAGATGGGAAGGAATTTCCTTGTCACAAGTGTGTTTTGTCTGCTCGATTAGAATATTTCCATAGCATGCTGGGCAGTTCCTGGATAGAGGCGACTTCCTGCACAGCTCTTGAAATGCCGATCCAGTCTGAGATCCTGCAGGTCATCCTAGATTATGTTTACACTGATGAATGCCCGACAGTTAAAGAGTCCTTCAGCGTGGAGTTTGTCTGCAATGTGCTCGTGGTGGCCGATCAGCTCCTAATCGCACGTTTGAAGGAGATGTGCGAAGTTGCCATTACTGAGAAACTAACCCTAAAGAACGCGgctgagctgcttgaatttgcTTCAATGTACAATGCGGATCAACTGAAGCTGTCTTGCCTGCAGTTCATAGTATTGAACATGGCAGCATTATTGGAATCAAGAGCCCTGGATGTCCTGAGTGACGAGGTTTTATTGGATTTGTCTGCTGCCTACAGGAGGATGATCCCTGCAATGCAGAAACGACTGATTACTCCCTACCCTGATGTACCAGACCTCCGTTCATTTGAGACGGATGACTGGGAAAACTCGTTGCCCCAGAAGGCCGAGACCGATGTAGAGTACGTGTCCAGAGAAACACTGTTGAAGAAAGCTAAAATCAAGGCCAAGAAGAAGCCAAGACGGCGCTCTGACAGTTCAGGAGGGTACAACCTGTCTGATATCATCCAGAGCCCGCCTTCTACAGGTTTGGCAAAGACTGGCAAGAATAATTCTATTGAGTCACTGCAAGAGCTCCTCACATCAGACTCGGAGGGCAGCTATGTGGGAGTCGGCAGTCCTCGAGAGCTGCAGTCTCCTGTGTTCATGGCGGGACTCGGCCAGGACAAATCTGAGGTCTGCAGCATcCCTGCCAGCCATCCTGTTTTAGATCTAAGAGCCATCATGGAAATGGaggaaaatatacaaaaccGTGGGGCCACACCTAAAAGTACTATTTTGAACATCGGTAAACCCTCAATTCATGGAACCAAACTTTCCCAGAAGCAAAGAAAAATGATTGCTATGGCTGCTAAAGAAGGCACAGTGGAAAATACCCCAGTGAAATTGTCTCCAACATCCACTCCCTCCAAGACTGGGAAAGCATGGGCCACTCCACTGCACTCTTCCCCTTCCTTCAAGTCATTCCGTGATCTGTtgatggaggaggagaagacTGTGAGAGCTGGCTATTCTTCACCATCCATTGTGAAGAGGGTGTCTTTCAAAGACAGTGAGCACAGTGACAACGAGAAGCCAGGCGGGTGGTCTAAAGGAAACCTGAATTCTGGTGACCTCAGTTCCCCAGGAGTACAAGCAGAAAGTCCTAAacccaggATTGAAGAATGTGCTATTCAAGATTTGCTTATCCATTATAAGGCTTTCAACAACCCAGATGAGTTCATTGTTGTAGAAAGAGCCTCGCAGGGCCCAATCGCCACACCAATGTGGAACAAACACTGAGCACAAGAGTGTGAAGAATCCTCCCAAATATCATTTATATTGGAAATGGTCATTATCAGAGATCACAGACCACAGAATTGTGCATCCTTTTTATCTCTaaagtagttgtttttttcatttgtaggACTTTCTAGCATTTTCATCTGTGGCTGTCTGTAATTTGTTGTATTTAGATGAATAATGACCCAGGTTTACCATGATTTAGgacatcaaatatatacatgcactcATAGCTGGGACTGTCCAAATTTTCTGACTGCCATAGTGTTTTTCTAATTATATCTTGATATCTGAGcagaaaattatacattaaatgtttcaattttgCCCATTATGAGAATTGGTAACCTAATATCATTGTTTATGTTGATGTGTAAGtgaaacaaatgcacatgcAGATTTGTTAGTGATTCAAATAAGTATATATAGAAACTATTTTGagaatatagatttttcttttctttttttttttaacatccttTCCTGCGAAAAACATGCAAGGCCTTGGTGTAGGAATGTATGGAGCTGTGTTATCAGCTATGCATCATAAACAACTTAGGGGCTTGGATATGTTGATTTAAGTGCATTCTTGAGTTTGTTTATAGGTCTGGAGTTGAAGTGTTTAGCATATATCCTGTTGGTAAGGGGTTAAACGTGTGTCTGCGTGAAAGGCTGAGTCTTGAGATATGGATTGAGCTGCCAAGCAGTGTGCAGAGATGTAATAAAGAACACAC

Function

NR:

description
PREDICTED: inhibitor of Bruton tyrosine kinase-like

GO: NA

KEGG:

id description
K24810 IBTK; inhibitor of Bruton tyrosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004000 True 5197 mRNA 0.45 28 28979027 29002504

Neighbor

gene id symbol gene type direction distance location
AMCG00004002 fam46a,fam46aa,LOC100698511,LOC107378903 coding downstream 20729 28956293 ~ 28958298 (-)
AMCG00003995 elovl4,LOC108434897,LOC105908900,LOC103388604 coding downstream 263436 28699380 ~ 28715591 (-)
AMCG00003997 LOC105908893 coding downstream 344796 28609945 ~ 28634231 (-)
AMCG00003996 NA coding downstream 380409 28593023 ~ 28598618 (-)
AMCG00003987 NA coding downstream 600298 28378241 ~ 28378729 (-)
AMCG00004001 NA coding upstream 43627 29046131 ~ 29081592 (-)
AMCG00004004 LOC100304755 coding upstream 106441 29108945 ~ 29118705 (-)
AMCG00004005 NA coding upstream 188176 29190680 ~ 29197175 (-)
AMCG00004018 prdm13,LOC106583971,LOC106605027 coding upstream 498341 29500845 ~ 29506998 (-)
AMCG00004021 NA coding upstream 510506 29513010 ~ 29526510 (-)
G5012 NA non-coding downstream 3760 28974978 ~ 28975267 (-)
G4982 NA non-coding downstream 85995 28892682 ~ 28893032 (-)
G4966 NA non-coding downstream 280003 28698475 ~ 28699024 (-)
G4923 NA non-coding downstream 507258 28471562 ~ 28471769 (-)
G4922 NA non-coding downstream 508610 28470190 ~ 28470417 (-)
G5032 NA non-coding upstream 5187 29007691 ~ 29010809 (-)
G5076 NA non-coding upstream 180588 29183092 ~ 29269921 (-)
G5181 NA non-coding upstream 1099941 30102445 ~ 30102654 (-)
G5194 NA non-coding upstream 1109879 30112383 ~ 30115011 (-)
G5269 NA non-coding upstream 1535432 30537936 ~ 30538437 (-)
AMCG00003967 LOC107095448 other downstream 2109449 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 2980399 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 3077415 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 4682781 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 5221231 23740585 ~ 23757796 (-)
AMCG00004006 NA other upstream 322237 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 1182114 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 1271302 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 1811277 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 1967175 30969679 ~ 30973496 (-)

Expression


Co-expression Network