AMCG00004001


Basic Information

Item Value
gene id AMCG00004001
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29046131 ~ 29081592 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004001
ATGTGGAGGACAGATGCACTGAAACAGCTCAGTGTCGCTGTTGACATTTCTGAGCATCTCAAAGGGTCGGACATATCGGCCCATGTGACCCGGACAGAAACGAGTTCTTCCGGGTCATTCTGTGTTGCGGTGCCCGGCGTGCAAACCCCTGACCTTGCCAAAAGTGCATCGGAGGTGGATGTCTCATGTGGTCCATCATGCTTGCAAATTAAGACTCCTGGCAGCTTGGTGGATGTACAGCTTCCAGTAGGTGTCTCCGTCGTTGCGGACTCCTGCAGGGAAGTGCCTGGTGCAGCACGGGATGGGCTGCATATGAGGCTGCAACTCAATAGTGATCATGTCACAGaagTGGTTCCAAGTCTGATTGAAAGTTTGAAAGCCCAGAAGAGTTATTGGTTTGCCTGCCAGTCATGTGGGGAAAGTGTCTTAATGGAGCGGGTGTTCCTCAGAGTGCTTCCATTGCCAGGTGGAAACTGGAATACACTGGTGGATGACTGGTGCTGCCATCCTGACCCATTTGCCAACAGGAAGCTGCTTCCCAGGAAGGAGGACTGCCTACTGGGGGACACCTTTATCCTGTTGAACTGGGACTGTGAGAGTAGCGAGACAATGACAAAGGAACCGAAGACCACTGACACACTCATCAGCCAAGACAAAGACTTAAAACAACTTTACATAACTGAGGTGACTGTGAGGTTATGTGAGGAAAATGAAAATCCCAGTGTCCATAACAGGTCTCTAtatgtggaaaatgtaattgcagCCAGACTTGTGGAATTGTCTACTACACAGAGTACATTTCGATTTTCAGTCCAAGATCCCAGTGGAAAAGCATATATTTTGCTCTGGCTtttaaacactgacacactcctCGTTTCCTCCATGGAGACATCCATCTGTAGTAGTGCCTTAATTTCATCCCAAGACAGTTCCTGCACTGAACATAAATCACAGGAAGCCAGCAGTGTCATTAAAGTTCTGTACCTTCCTTGTTTAAAAAGCCAACACCAAGATGTTATAGATGCCTGGGAGAAAAACATTGGGGTGCATCAGATTCCCCTGCCTAGGAAAACCTGTCATGACGTGCTGGAGATACTGTCAAGAAGCACTGCCACCCTCCCGCCGTCAATGCGGACGATGAATGCATTCCAGGTAGCATTTATGAAGCTGTGAAGCCCCCAGGACAGAGGTCAGCCTCATGGGAAGTCTTGCAGAGCACACGTTTCATCAGACAACAGCCAGCTGGGAATATTCTAGCTATAAATTTCATGACTTAGATTAAATTGCTGTTGTGTACTGAGGCAGGTTAGTATGGCTATCTTACAGTTATGTATGCATGATGATGATTTGCCTCCATACTAAGGATGAAATATCATgatatcaaatatttgtaactaataaatgtttttcacccGG

Function

GO: NA

KEGG:

id description
K20803 UBE3D; ubiquitin-protein ligase E3 D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004001 True 1416 mRNA 0.47 9 29046131 29081592

Neighbor

gene id symbol gene type direction distance location
AMCG00004000 LOC104961995 coding downstream 43627 28979027 ~ 29002504 (-)
AMCG00004002 fam46a,fam46aa,LOC100698511,LOC107378903 coding downstream 87833 28956293 ~ 28958298 (-)
AMCG00003995 elovl4,LOC108434897,LOC105908900,LOC103388604 coding downstream 330540 28699380 ~ 28715591 (-)
AMCG00003997 LOC105908893 coding downstream 411900 28609945 ~ 28634231 (-)
AMCG00003996 NA coding downstream 447513 28593023 ~ 28598618 (-)
AMCG00004004 LOC100304755 coding upstream 27353 29108945 ~ 29118705 (-)
AMCG00004005 NA coding upstream 109088 29190680 ~ 29197175 (-)
AMCG00004018 prdm13,LOC106583971,LOC106605027 coding upstream 419253 29500845 ~ 29506998 (-)
AMCG00004021 NA coding upstream 431418 29513010 ~ 29526510 (-)
AMCG00004019 NA coding upstream 457400 29538992 ~ 29546101 (-)
G5032 NA non-coding downstream 35322 29007691 ~ 29010809 (-)
G5012 NA non-coding downstream 70864 28974978 ~ 28975267 (-)
G4982 NA non-coding downstream 153099 28892682 ~ 28893032 (-)
G4966 NA non-coding downstream 347107 28698475 ~ 28699024 (-)
G4923 NA non-coding downstream 574362 28471562 ~ 28471769 (-)
G5076 NA non-coding upstream 101500 29183092 ~ 29269921 (-)
G5181 NA non-coding upstream 1020853 30102445 ~ 30102654 (-)
G5194 NA non-coding upstream 1030791 30112383 ~ 30115011 (-)
G5269 NA non-coding upstream 1456344 30537936 ~ 30538437 (-)
G5273 NA non-coding upstream 1471385 30552977 ~ 30553218 (-)
AMCG00003967 LOC107095448 other downstream 2176553 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 3047503 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 3144519 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 4749885 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 5288335 23740585 ~ 23757796 (-)
AMCG00004006 NA other upstream 243149 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 1103026 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 1192214 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 1732189 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 1888087 30969679 ~ 30973496 (-)

Expression


Co-expression Network