AMCG00004002 (fam46a,fam46aa,LOC100698511,LOC107378903)


Basic Information

Item Value
gene id AMCG00004002
gene name fam46a,fam46aa,LOC100698511,LOC107378903
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28956293 ~ 28958298 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004002
aaaggAGAAAAGCAATCGGGAAAAGACGCGTTCAACTTGACCAGCTGTGTTGCTTCTAAACGGCATTTTGTACAGTGCAGTCTCCGGCACAGCTGGAAAACGGCAAGAGAAAAGACTTTCCCGTTGACATAAAGTAGCTGTGCACTGCGACCATGGCAGATGAGGACCATGCTGGCAGCAGCCCGGGAGCCGAGAGCTGCAATCTCAACGTGCTGACCTGGGAGCAAGTGCAGCGCCTGGATAACATTTTGACAGAGACGATTCCCATCCACGGCCGAGGCAATTTCCCCACGTTGCAGATGAAACCCCGGCAGATCGTCAAGGTGGTGAGGAGCCGCCTGGAGGAGAAGCAGATCCCGGTGAGAGACGTGCGGCTGAACGGCTCTGCGGCCAGCCACGTCCTGCACGAAGACAGCGGGCTGGGGTACAAGGACCTGGACCTCATCTTCTGCGCCGATCTGAAGGGGGAGGCGGAATTTCAGACTGTCAAGGATATTGTTTTAGACTGTCTCCTGGATTTCTTACCCGAGGGGGTGAACAAGGAAAAGATCACACCTTTAACTTTAAAGAACCCAATGACGGAGACCTTCCACCCAACCATCATTGGCGAGAGTGTCTATGGAGATTTCAAAGCTGCCCTGGACCATCTCTGTCACAAAATAATTGCCACCAGGAACCCCGAGGAGATCCGAGGAGGGGGGCTTCTCAAGTACTGCAATCTGCTGGTGCGGGGCTTCAGGGCCGCGTCTGAGCCCGAGATCAAGTCCCTGCAGCGCTACATGTGCTCGAGATTTTTCATTGACTTTTCAGATATAGGAGAGCAGCAACGGAAACTGGAGTCCTACCTACAGAACCACTTTGTGGGGCTTGAGGACCGCAAGTACGACTATTTAATGACTCTACATGGGGTGGTGAATGAAAGTACTGTGTGCCTAATGGGACACGAGAGAAGGCAGACCCTAAACCTTATTACCATGCTAGCCATTCGCGTCCTGGCAGAGCAAAACATCATCCCCAATGTGGCTAATGTCACCTGCTACTACCAGCCTGCCCCTTATGTGGCAGATGCCAATTTCAATAATTATTACATTGCCCAAGTTCAGCCTGTGTTCGCCTGCCAGCAACATACCTACTCAACCTGGTTACCCTGTAATTAA

Function

NR:

description
PREDICTED: protein FAM46A

GO: NA

KEGG:

id description
K23033 TENT5A_B, FAM46A_B; terminal nucleotidyltransferase 5A/B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004002 True 1157 mRNA 0.52 2 28956293 28958298

Neighbor

gene id symbol gene type direction distance location
AMCG00003995 elovl4,LOC108434897,LOC105908900,LOC103388604 coding downstream 240702 28699380 ~ 28715591 (-)
AMCG00003997 LOC105908893 coding downstream 322062 28609945 ~ 28634231 (-)
AMCG00003996 NA coding downstream 357675 28593023 ~ 28598618 (-)
AMCG00003987 NA coding downstream 577564 28378241 ~ 28378729 (-)
AMCG00003986 atg5 coding downstream 625691 28272497 ~ 28330602 (-)
AMCG00004000 LOC104961995 coding upstream 20729 28979027 ~ 29002504 (-)
AMCG00004001 NA coding upstream 87833 29046131 ~ 29081592 (-)
AMCG00004004 LOC100304755 coding upstream 150647 29108945 ~ 29118705 (-)
AMCG00004005 NA coding upstream 232382 29190680 ~ 29197175 (-)
AMCG00004018 prdm13,LOC106583971,LOC106605027 coding upstream 542547 29500845 ~ 29506998 (-)
G4982 NA non-coding downstream 63261 28892682 ~ 28893032 (-)
G4966 NA non-coding downstream 257269 28698475 ~ 28699024 (-)
G4923 NA non-coding downstream 484524 28471562 ~ 28471769 (-)
G4922 NA non-coding downstream 485876 28470190 ~ 28470417 (-)
G4921 NA non-coding downstream 486441 28469574 ~ 28469852 (-)
G5012 NA non-coding upstream 16680 28974978 ~ 28975267 (-)
G5032 NA non-coding upstream 49393 29007691 ~ 29010809 (-)
G5076 NA non-coding upstream 224794 29183092 ~ 29269921 (-)
G5181 NA non-coding upstream 1144147 30102445 ~ 30102654 (-)
G5194 NA non-coding upstream 1154085 30112383 ~ 30115011 (-)
AMCG00003967 LOC107095448 other downstream 2086715 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 2957665 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 3054681 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 4660047 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 5198497 23740585 ~ 23757796 (-)
AMCG00004006 NA other upstream 366443 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 1226320 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 1315508 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 1855483 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 2011381 30969679 ~ 30973496 (-)

Expression


Co-expression Network