AMCG00004004 (LOC100304755)


Basic Information

Item Value
gene id AMCG00004004
gene name LOC100304755
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29108945 ~ 29118705 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004004
GCGCAGCTTCCAGGAGCGCTCGACTCATTTCTCACTACAaaaTGGCTCAGTTTGAGAAGGTATCCAAAAAGTCTGCTCTTCACCCTAAGCCTGCTGGATTGGTTCTCCAGTATGGCACAGCGGGATTTCGCACCAGTGCTCAGCAACTTGACCACATCATGTTTAGGATGGGACTGCTGGCTACACTGAGGtccagaaaaactaaatctacCATCGGAGTAATGGTTACTGCCTCCCACAACCCTGAGGAGGACAATGGGGTGAAACTAATAGACCCTATGGGAGAGATGGTGTCCGCTGCTTGGGAAGAGTATGCCACACAACTGGCTAATGCAGAGCAGGAGGGATTACTGAAAGCCTTAAAGGATATAATTGAAAAAGAAGCTGTGGACATGAATCAGGAGGGCTACGTAGTCATGGGGAGAGACACCAGTGTCACTCTATTGACAGATTACGGCCTGGTGACGACCCCACAGCTGCACTTTGTGGTTTGTTGTCAGAACACGCAGGGCAGGTACGGCACAGGTACTGTAGAGGGCTACTACCAGAAGCTGGCCCAGGCTTTCATTCAGCTTACAAAGCAGGCACCTAACCGCACAGACGAccagaagcacattaaggtggATGGTGCGAATGGCATCGGGGCCTTGAAGCTGAAGGAGATGGAGCAGTTTCTGCAAAAGGAGCTGCAGATATCGCTTTACAATGATGGCAGCTGTGGAAAACTCAACTACCAGTGTGGGGCGGATTATGTCAAAGTACAGCAGAAGCCTCCACATGGTCTCCAGCTGACAGTAGGGGAACGCAGCTGCTCTTTCGACGGAGACGCTGATAGAATAATTTACTACTACGTTGATGCGGCTAAGTGCTTTCACCTGCTGGATGGAGATAAAATCGCAATGTTGATCAGCACCTTCCTCAAAGAGCTCCTCGTACAAGCTGGCTTGGATCTACAGATCGCAGTGGTACAGACTGCTTACGCAAATGGCAGCTCAACTCGTTACCTTGAAGAAACAATGAAGGTACAAGTACACTGTGCAAAGACAGGGGTCAAGCATTTGCACCATAAGGCTCAGGAGTTTGACATCGGGGTTTATTTTGAGGCCAATGGCCACGGCACTGTTCTGTTCAGCAAAGCAGCTgaagagaagatcagacagCTGGCACTAGaccaaaatataaatgatgAGAAAAAAAGGGCAGCGAAGCTCCTGGAGAATACTGTCAATCTAATCAATCAGacGGTGGGCGATGCCATTTCAGACATGTTGGTAATCGAGGCTATCCTGGCTCTGAAAGGCATGAGTGTTCAGCAGTGGGATGCCATGTATACTGATCTGCCAAACAGACAGCTCAAAGTCAAGGTGATCGACAGGCGAGTCATTGAAACGACGGATGCAGAGAGGCGTGCCGTGACCCCGGCAGGCCTGCAGGATGCCATTGATGCTCTTGTGGGCAACTACAGCCTGGCAAGGGCCTTTGAGAACGCAGACACCCTGGCATATGAAGTGAGTCTGGAAGTGTACAAATtagcaggaggagctggagatgAGCCAAAGCCACTACATTAACTACAGTCGACTCTAGTTTGTCCTGTATACGCTTTGAACTCAAGAtgaatgttttctgaaaatcgTATTAAGTTTTATAAAACACTATGTGGTGTTTATGGATGGGTGAAATTTgacaatgattttgttttgtaatgtactGTTTAACCTCGGCCAAGTCAAGTGCTGCCCATGTCGTCCTGAAGCTTTGCTGGACTTCCCAAACAAAGCGATCCACACTAAATGAAGGATTAGTACACCATATTGTTTATTGCAGTGTTGACAATATTGGGTGATTGTatttgtgtgagagagggatTCACTTGCCCATCACTGTTCTCTAATGGTACAGTTTgggattttctgtttttgtctgtattttccaTGTAAGTCAATCAtggtgatattttttttaattgaatgttaattctattgtatttatatttttctgccGATATCAGCAATTTGTCCAATAAAGAAATTCATAATATTAACCTTAATGATGACTAACTCTGCACATGTGATCTAACCATCTCTAAATATGTTtgtactaaaacaaacactagactttatatttttgatatttgAAGGAGCTTTCCAAAATTGACCCTGTAAAAGACCTCTTAATCTAAAGAGCCTACTGCatactgtatttttcaaatgtgacACTACCTTTGGTTGATAACTCAGAATTTAGGGAGGGGTTACATGATACCCTCACTCTTCAGTGTACTGTAGCCTTTAACTTGCCCTTAAGAACATACAAGTCTCATATGTTACTACATCCTATCTGTGTAAGTGCATTATGTTAttgaagttaatttaaatattgttaatattcTTTTATATAAAATTTGAGATTTGTATTCCCTAATGGCACAAAAATACATCCATATTTTCATGTAGAAATGTTTAATCAAGATAATTGAATGGAGAGCATATATGCAATAAACTGCTATCCAGatgacaaa

Function

NR:

description
phosphoglucomutase 3, partial

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004610 phosphoacetylglucosamine mutase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01836 PGM3; phosphoacetylglucosamine mutase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004004 True 2521 mRNA 0.43 12 29108945 29118705

Neighbor

gene id symbol gene type direction distance location
AMCG00004001 NA coding downstream 27353 29046131 ~ 29081592 (-)
AMCG00004000 LOC104961995 coding downstream 106441 28979027 ~ 29002504 (-)
AMCG00004002 fam46a,fam46aa,LOC100698511,LOC107378903 coding downstream 150647 28956293 ~ 28958298 (-)
AMCG00003995 elovl4,LOC108434897,LOC105908900,LOC103388604 coding downstream 393354 28699380 ~ 28715591 (-)
AMCG00003997 LOC105908893 coding downstream 474714 28609945 ~ 28634231 (-)
AMCG00004005 NA coding upstream 71975 29190680 ~ 29197175 (-)
AMCG00004018 prdm13,LOC106583971,LOC106605027 coding upstream 382140 29500845 ~ 29506998 (-)
AMCG00004021 NA coding upstream 394305 29513010 ~ 29526510 (-)
AMCG00004019 NA coding upstream 420287 29538992 ~ 29546101 (-)
AMCG00004020 pou3f2,LOC106584047,LOC106605033 coding upstream 579335 29698040 ~ 29699320 (-)
G5032 NA non-coding downstream 98136 29007691 ~ 29010809 (-)
G5012 NA non-coding downstream 133678 28974978 ~ 28975267 (-)
G4982 NA non-coding downstream 215913 28892682 ~ 28893032 (-)
G4966 NA non-coding downstream 409921 28698475 ~ 28699024 (-)
G4923 NA non-coding downstream 637176 28471562 ~ 28471769 (-)
G5076 NA non-coding upstream 64387 29183092 ~ 29269921 (-)
G5181 NA non-coding upstream 983740 30102445 ~ 30102654 (-)
G5194 NA non-coding upstream 993678 30112383 ~ 30115011 (-)
G5269 NA non-coding upstream 1419231 30537936 ~ 30538437 (-)
G5273 NA non-coding upstream 1434272 30552977 ~ 30553218 (-)
AMCG00003967 LOC107095448 other downstream 2239367 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 3110317 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 3207333 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 4812699 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 5351149 23740585 ~ 23757796 (-)
AMCG00004006 NA other upstream 206036 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 1065913 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 1155101 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 1695076 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 1850974 30969679 ~ 30973496 (-)

Expression


Co-expression Network