AMCG00004011 (ccnc)


Basic Information

Item Value
gene id AMCG00004011
gene name ccnc
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29527414 ~ 29541358 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004011
CGAAAACAGTAACTTCGTTTATAGAGACTGAGCAGCGCTGCCGAGAAGAGCACGACAACACGTTTACATAGTCTGCCTCGCCTGTTTGCGTGATGGCAGGAAACTTCTGGCAGAGCTCACATTATTTGCAGTGGATCCTTGACAAACAAGATTTGATGAAGGAGCGCCAGAAGGACTTGAAGTTTCTTACAGAAGAAGAGTACTGGAAATTGCAGATATTCTTTGCTAACGTGATTCAGGCCTTAGGAGAACATCTGAAGCTCAGGCAGCAGGTTATAGCCACAGCTACTGTGTACTTCAAGCGATTTTATGCCAGATACTCTCTTAAAAGTATAGATCCTGTTCTCATGGCTCCAACCTGTGTGTTCTTGGCATCCAAAGTAGAGGAATTTGGTGTTGTTTCAAATACCAGATTGATCTCAGCTGCTACATCTGTATtaaaaacTAGGTTTTCTTACGCTTTTCCAAAGGAGTTTCCCTACAGGATGAATCATATATTGGAATGTGAATTCTATCTGTTAGAACTAATGGATTGTTGTTTAATAGTCTACCATCCCTATAGACCTCTTCTTCAGTATGTACAAGACATGGGGCAAGAGGACATGTTGCTCCCTCTGGCATGGAGAATTATCCTTGAGATCATCAGAGTCATTCTGAAGCTATATGACCAATGGAAAAACTTTGATGACCGAAAAGAAATGGCTGCAGTTCTCAACAAAATGCCTAAACCAAAGCCTCCTCCAAACAGTGAGAGTGACCAGAGTTCCAATGGAAATCAAAACTCAACCTACAATCAATCCTAGGAACTGTGAAATTTGATGCAGCAGAATGTGTTTGAACCAGGGAGCAATACACACTTTATTCAGGAGTGAACAAGCTGGTGGCCCGTTGTATGGGCTATTCTTTCTTGGATGTATGACGCCATCTCCAACATGTCCACCGGACAATATTATGTATCTCAagttttattcataattttgtaGACTTATGAATTCATGGTAGGTCTTATTAGCCTACTAGCATAAGGCACTCTCTTAATGTGTGTGGCCTTGTTACGGCTAGTATGCTTGAAAAGGGGGAAACATGATGTACCAAAACTAAACTGCTGGGTACAATCGGTGGAAAATCAGCTGAAATTCATAAGAATCGAAAGACTTGTTTCGTGGTGTTGTTTACTTCCTTGAAGAGTTGCACCGCCTAAAGTTAATTCTGTGGATTTCTGAAAATTGAGTTATGATTCCAAGAAAACTTGAttggtaatataaatattttattggcaATTGGTGAGTAGGTTGTAATTTCTTTGCACACCACTGTTTTGCATTACTTTCAGCAATAGATTAATGTTATAGAGGGGTTTGTGGCTTTGGGGAAAACAAATGATTGTGTTTACAGATATTGGTGTGTGAAACTATGGACCTTTTTGTTAGATTTTCTGGGCATTAGTTCTTCATGTTATTTTGACAGTGGGTTTCTGAGTACAAGGTGAGATGTTGGAGAATGTTTCAACATAAATATCTGAAGTTAATTGGGGGGCACTGTTAGAATACTTACAGTTTGCCTCTTTTTTGGTTTTTCTGACCTGTGACACAAGATTGTACACCTAAATGATTTTGAACATCCTCagacaaaaatgtatatcttgGCATCGGCTAAGCCTATCATATACCACTGAAAGCCACCGTTTCAATTGGTGCTATTCggtacattattttctgtgtgtgtgtatgtgttgagTGTAAGGATTTCAGATTTTTGCAACAAGTGGATAATGTTTAGAAACAACTGTTAAACAGGAGTTACTACCTAATTGGGTATATGATGcattaaactaaatgttttgggCAAGCTAGTTCACACTTGATCATTAAAAGCAACAATTCAAGAAACCAAATGGAGCACCACACATAatgataatggaaaaaaaatactactttGTGATACCTCTGCTTTGAAAAGgattggatttaattttaattactgcAATTATAATTAAAGCACTATGAATATACatgcaatttgaaatatatattaagtaaCTTATTTTTCCCCAAATCACACTTTGGCTAAACACACAAGATTGTAATAGtcaattaattcaaaattacagtacaataaatcagtttttgttttattgaagaaTTGGTCTGTAACTCACTGTAAAGCTGGTCTATAGTTTGCTTTTCCAATTCTCTAGATACCGGTTGGATAATAGAAAGAAATGGCACAATATTTGCTTCACCAACATGATGgcttttatttacatgttaatgattttaaagTACAAAGAAAGGCAAGTCTAAATGACAGGAATGTTTGAAGGGATGTGTGGTTGATTTATAACTTGCTGTAGATCACAAATGAGAGCACTTAGGTGCTTAGAACGACCATCTCTGAGCAGCTTGTTATATATTGGCTTCAGCAATTAATTGTCTTTCTTTATATAAGTTGGCTTAATACCTGGTGTAAGTGCTGTAATCTGAAAAAAGTTCTGTTCATTCATTCCAAGGCAGTATTCATAACTTGTCATAATACCCTGGAAAAGGAGAAAGTCCAACAGTAATGTGCTATGTATACTTTGACTGTGTCAGTGTCTTTTAGGAGTTATTTTTAGTAAGGATGTGGGTACACTTCATTTGACTGTATTACGTGCTTGTGGGTTCCTTATCAACAGGGGCTATTTTATTCCATCCATCACCTACTGAAGCACTGGTAATAGATAAACAATGCTTGAATGCCTTAAGAGTAAGCTGCTGGTTTCAAAATGATAAAACTTGATCAATGTAGACTGTGAAAATGTCTAAAGTTGAACTGTAATGACTGTTGCTTCAGCAGTTCAATGTAGTTTAATATAGTTGCTGGATTTGgatatttctatattttgttaGCCAAGGACACATTCTAAACGGAAATGCAGCTGGAGGGGGAAAAATCCCTAAGGATCTTGTCACATAATTGTTCTTTGAATAAGTTAACATATTTCAATATCAGtgtcttgctttatttttatggtaGTAGTCCTTGCTCCTTTTATTGCATTATGTTCAATGATTTGTATTAGAACCTTTTGAAAAGTCTTCAGGTCAACAGACCTCGCTTCactgtttatttcattcatGCACTTGTTCAAGtaccactttttaaaaacaaattaaagtattacttGACGTGtaagttgttttttgtatggTTATTAGGGGAATGGAATTGAAATTGTGCTAACTGAATCGCCACATTTTCGAACAGTGCTTTCTCAAGTGTTACCTCCTCACTTCCTTGCAATGTAAATTTCAAGAATGGTTATGAACACCTTGATTAAAAATTCACCAGTTGTCTTTAAGTGCAGCTCTTTAGACAATATGATCTGCAATGTCAAGATCACTACATTACTACAAAGGGAACTTTCTctttagaaaaaatacagattaaagaGATTTACAAGTACACTTTACAATACTTGTATAGAAACAAAGGATATGTGAGCACATACATTTATCATGTATACATATAGGGTACTTGAGTGAAATCATAAATGTGATGTGATTGAGATTAAACTGGGACAAAAGTCAAGGAAACCATGGCTATAGAGGTTTTACTcgtgaaaaataatttacatttttcatttgcccCCCCTTTACTTTAAGGAACTAGTCACAAAATTGCAATAAAAACTGTCTGTTGGATACTGAGTACAGTGGCTGGAATGTTTTTGACTTCAGAGTTATCAAGGTTGCAGACAATATGTAGCTTTAATACGCAACATATGGTGAAATTGCATGATATTCGTACCATACCAGGAACGCACTGTTGATTGAATCTTCAAGCTTAGCTATTCATTTAAGCTTTTTGATCCACATCCTGTATGAATAGGACATATTTTACCTAATCTGTTGTGTAGACAATAGCTTTCTCCTGAGTTTCTGAGTGAAATGCCAACATAACCTCACGTGCACATGCGAGTGTGGTGTGTGAATATGGCTGGCATATTACAGACATTAGACTTTAGCCATGCATTATTTTTCAGCTCATTAGGAATATCCAAGAAAGTCTGGATTGCTTAGCTCTGACAGCTGTTTAAAAGTAAAGATTTTACTGAAAAGCATAAATGATATGATTGTCATGGAAGTAAATCCTGTTTAATAGAACACAACACAATGATCGTGGAAATGAACATtcaaagtataaaacaaaatatatagtttatgtatttatctcccccctccccctctctctatatatttatatatattacctTTTGCAGTAATCAAACAAAACTTTACTTTTGCTTACAATTTCCAGTATAACATTGAAAGCCTGAAAACTACGTATATTTTGAGCCTTCTCAAAATACTTAAGTGTTGtcaataactttatttttacagtaaagtTTCAAAATATTGCTTATGTACTCTTGATGTACAGTTATATggaaaaagtaacaaaatataatttgtatattaaagtataattattttcttaatcttttctGCATAATAGGATAtctgtttatttcaaaacaatacacaatgtACTAATGCATTTACATGTATATCTATAATAGTTTTCTGCACTGTAACCAACACATCTTGCACATGCACAGGTATGTGTTGACTACTGtgaataaagcaaaataacacattCCTTAATCTTTTGAAAATTTCCTGAAGGTATAAAAAAATTGCAACATGCCTgtgtttaaattgattattccacagacaaatacaaaaacaagcactTGTTGTTTTCTTAGTTGTTACTTGATTGTACTGATGCAAACTTCAGAAttcattaacatacatttttgtcaaACAAGCAATTTAATGAAGCTATGGCTTAATACGGGTAGCAAGAAAATTCCAACAATTGCTTAAAAATGATTTTCCAACACACAATTCCATAGTGATTAATCCTGACACATTCCTTCAGCTTCAAAAACCTAGCAACACCCATCACATTAAAAAAGGCAATATGTGTTATATTTAAAGTTCAGTTCaaaatttaaatgcaatctGTGGTTATTTGATTAAAGTAAAatctgtattaatattaatatcagaaataaaaccCATACTTTCCCTTACCATGCAATGTAAACAATACTTTTACAATCATTCGTTTTTTTCCTGGATGTTGTCTTTTGCTACAGCTAGCTGTATAAAAGTCATGTTGTTTCACTGAAGACAAATCTCTtcagtttttcttatttattaactCATTCCGCACCCATTCTTCCCAACCACCTGGaaaaaaagttgCTCACTTGGTGTATCCTAAAGACACAGCTGTTTCCAGAGCCTTTTTGCTTCTGACTCCAGCGAGGCAAGAGAAGATAATGTTGTCGGATTGTGATGGCATGTATGAACCATACTTCTCCTTGAATTCATCAGGGTCCAACTTTAGAGCTGCATCCACTTGACCCACTGGGACATTGATAGCGCCAGGGATCTGCCCATATTCTCTGAGCTCCCACGGTTCCCGGACATCAATCACCACAGCACTGGTCTTGTCTGCGAGCAACTGCTTCAACTTTTCATAAGAGACATCTGGGCTGGACTCGGAGACGGTGCTGTATCTGCGAGAGAGGCGCTGTCCCGCCCGGGTGCCTAGCAGGGACGAGGAAGTACTCCCGTACGGTAAAAGCACAGGCGATCTTCTGCTACTGCAAGCCCAGGAAAGCGCTGGTGTCACATTCCTGTACAACACAATGCAAGGAATGATTCCCTTTAGCCTTGAAGATGCCATTAGAGATATTTCCCAAAAATCCTACAGAGAAAAACTCGATATCCACATAAGGACTGCTCTTCTACTGGTCAAGAACGGAGTGTTGCATATGCGCTTGCGCAGAAAAACGAGCCTTAATCTGCTCAGTCGGGGTATG
>TU6230
CTACTATAAAGAATGTATCTCTTTTCCATGAGGGTGACTTAGCTGTACAttcattgaagaaaaaaagttgCTCACTTGGTGTATCCTAAAGACACAGCTGTTTCCAGAGCCTTTTTGCTTCTGACTCCAGCGAGGCAAGAGAAGATAATGTTGTCGGATTGTGATGGCATGTATGAACCATACTTCTCCTTGAATTCATCAGGGTCCAACTTTAGAGCTGCATCCACTTGACAGGGGACATTGATAGCGCCAGGGATCTGCCCATATTCTCTGAGCTCCCACGGTTCCCGGACATCAATCACCACAGCACTGGTCTTGTCTGCGAGCAACTGCTTCAACTTTTCATAAGAGACATCTGGGCTGGACTCGGAGACGGTGCTGTATCTGCGAGAGAGGCGCTGTCCCGCCCGGGTGCCTGCAGACAAAGTGGTGCAGCGCCAGATCCCGATTGTTATCCGCTGTATCTTACTCACACGTCCCGACAAGCGAAGCACACTGATAGTGCCACACTGCAGCTACAACACACATGCAAGATCTGTGTTTTAATCAGTCCATGACCTATTATGATGTGGTCTTTGACTCGTTTCATACATGTTGACCATCTCAGTTTGAAAACACATATACTGATTACACAAGCAGGACGCTGTACTAAATATAATGCTGACACTTACAGAGCAGGGACGAGGAAGTACTCCCGTACGGTAAAAGCACAGGCGATCTTCTGCTACTGCAAGCCCAGGAAAGCGCTGGTGTCACATTCCTGTACAACACAATGCAAGGAATGATTCCCTTTAGCCTTGAAGATGCCATTAGAGATATTTCCCAAAAATCCTACAGAGAAAAACTCGATATCCACATAAGGACTGCTCTTCTACTGGTCAAGAACGGAGTGTTGCATATGCGC

Function

symbol description
ccnc Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Acts upstream of or within glomerular visceral epithelial cell development. Predicted to be part of mediator complex. Predicted to be active in nucleus. Orthologous to human CCNC (cyclin C).

NR:

description
PREDICTED: cyclin-C

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0016591 RNA polymerase II, holoenzyme cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K15161 CCNC, SSN8; cyclin-C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004011 True 5878 mRNA 0.36 14 29527414 29541358
TU6230 False 904 lncRNA 0.51 2 29539213 29541316

Neighbor

gene id symbol gene type direction distance location
AMCG00004010 NA coding upstream 136286 29380583 ~ 29391128 (+)
AMCG00004008 me1,LOC106583951,LOC106605032 coding upstream 205801 29305204 ~ 29321613 (+)
AMCG00004007 me1,LOC107597132,LOC107704946,LOC107587764,LOC107716854,LOC107730934,LOC107700750 coding upstream 262174 29259960 ~ 29265240 (+)
AMCG00004009 NA coding upstream 342710 29142762 ~ 29184704 (+)
AMCG00004003 NA coding upstream 419010 29082093 ~ 29108404 (+)
AMCG00004016 NA coding downstream 19991 29561349 ~ 29564564 (+)
AMCG00004014 NA coding downstream 39744 29581102 ~ 29587151 (+)
AMCG00004017 NA coding downstream 50245 29591603 ~ 29598227 (+)
AMCG00004015 NA coding downstream 59203 29600561 ~ 29611530 (+)
AMCG00004012 NA coding downstream 71831 29613189 ~ 29626518 (+)
G5085 NA non-coding upstream 165735 29354521 ~ 29361679 (+)
G5005 NA non-coding upstream 574349 28952553 ~ 28953065 (+)
G4981 NA non-coding upstream 634383 28892684 ~ 28893031 (+)
G4917 NA non-coding upstream 1058470 28466917 ~ 28468944 (+)
G4837 NA non-coding upstream 1421707 28104210 ~ 28105707 (+)
G5129 NA non-coding downstream 142869 29684227 ~ 29685543 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 156309 29697667 ~ 29699224 (+)
G5185 NA non-coding downstream 567483 30108841 ~ 30109040 (+)
G5191 NA non-coding downstream 580737 30122095 ~ 30123181 (+)
G5198 NA non-coding downstream 604497 30145855 ~ 30146557 (+)
AMCG00003993 NA other upstream 843433 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 941740 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1061768 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1127673 28379811 ~ 28399741 (+)
G4831 NA other upstream 1424203 28062363 ~ 28103211 (+)
G5245 NA other downstream 729852 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 755509 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 1346637 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2859047 32400405 ~ 32402383 (+)
G5642 NA other downstream 3588762 33130120 ~ 33131186 (+)

Expression


Co-expression Network