AMCG00004015


Basic Information

Item Value
gene id AMCG00004015
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29600561 ~ 29611530 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004015
CATGTACACATCCGCATTCATTAAATACATGCTAAAGACATGGTACGATTTCATTTTGCGTTTGCTTTGAGGAAGAAGTTATTGGGTCTTTCCGGCGGTTTAGATGTTGCTGCTGCGCGGTCGCGGTGTTGTCTGAGCGCCGTGTCTAGACGTGGGACACGACCCCTCAGACCGGCCCCTGCCCCGGCCAACTCCAGGCCTTCTGTCACAAAAATGAGCACAGCATCAAAGACAACACTGGACCCAAGTGAAATGAAGAAATTTCAGTCACTTGCTGACAAATGGTGGGATGAAACGGGTGACTTTGCAGCTCTTCATTCAATGAATGATCTGAGGGTCCCTTTTATAAGGGATAATCTGTTGAATTTAAATGGTGGTCGGAAATCAGGAGGCCCCCTGTCTGGTTTTAAAATCCTGGATGTTGGCTGCGGGGGAGGACTGCTGAGTGAGCCGCTGGGGAGACTTGGGGCTTCGGTTACCGGAATCGATCCATTAGAGGACAGCATACACACTGCAGAGCTGCACAAATCGTTTGATCCTGTTCTGAACTCGCGGGTCCACTATAGGCCCTGTGCCCTCGAAGACATTGTTGAAGAAGCAGAGGAGGAGTTCGATGCAGTTTTGGCATCTGAAGTGGTCGAGCATGTGAGTGACCCGGAAGCGTTCGTGCAGTGTTGCTGTGACGTGTTGAAGccAGGAGGATCTTTGTTCATTACCACTTTGAACAAAACCAACCTTTCCTATGCATTAGGGATTGTTATGGCCGAGAAAGTCATGAAAATTGTGCCAAGTGGAACACATGACTGGGAGAAGTTTATTAGTCCTGTGGACCTGGAAAGACTTCTTGAATCAAATGGTTTCTGTGTTGAGTGTATTCGTGGAATGTTCTACAACCCTATATCTGGCTCCTGGAGTTGGATTGAAAGTACAGCTCTAAACTATGCAGTTCATGCAGTGAAGCAGAAAATGCAATTACAGTCTGATTTCACCAGAACCTCAGAAGATCAGGATCAAAAGGGAACCAGCGAAGGATATACAGTATAACTAGTATTTCCTCCAGACTTTTT

Function

GO:

id name namespace
GO:0006744 ubiquinone biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity molecular_function

KEGG:

id description
K00591 COQ3; polyprenyldihydroxybenzoate methyltransferase / 3-demethylubiquinol 3-O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004015 True 1067 mRNA 0.47 6 29600561 29611530

Neighbor

gene id symbol gene type direction distance location
AMCG00004017 NA coding upstream 2334 29591603 ~ 29598227 (+)
AMCG00004014 NA coding upstream 13410 29581102 ~ 29587151 (+)
AMCG00004016 NA coding upstream 35997 29561349 ~ 29564564 (+)
AMCG00004010 NA coding upstream 209433 29380583 ~ 29391128 (+)
AMCG00004008 me1,LOC106583951,LOC106605032 coding upstream 278948 29305204 ~ 29321613 (+)
AMCG00004012 NA coding downstream 1659 29613189 ~ 29626518 (+)
AMCG00004013 NA coding downstream 52273 29663803 ~ 29681594 (+)
AMCG00004023 NA coding downstream 372083 29983613 ~ 29998684 (+)
AMCG00004027 NA coding downstream 482772 30094302 ~ 30097720 (+)
AMCG00004024 rwdd1,LOC107587776,LOC107704860,LOC106579327 coding downstream 499556 30111086 ~ 30114969 (+)
G5085 NA non-coding upstream 238882 29354521 ~ 29361679 (+)
G5005 NA non-coding upstream 647496 28952553 ~ 28953065 (+)
G4981 NA non-coding upstream 707530 28892684 ~ 28893031 (+)
G4917 NA non-coding upstream 1131617 28466917 ~ 28468944 (+)
G4837 NA non-coding upstream 1494854 28104210 ~ 28105707 (+)
G5129 NA non-coding downstream 72697 29684227 ~ 29685543 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 86137 29697667 ~ 29699224 (+)
G5185 NA non-coding downstream 497311 30108841 ~ 30109040 (+)
G5191 NA non-coding downstream 510565 30122095 ~ 30123181 (+)
G5198 NA non-coding downstream 534325 30145855 ~ 30146557 (+)
AMCG00004011 ccnc other upstream 59203 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 916580 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1014887 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1134915 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1200820 28379811 ~ 28399741 (+)
G5245 NA other downstream 659680 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 685337 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 1276465 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2788875 32400405 ~ 32402383 (+)
G5642 NA other downstream 3518590 33130120 ~ 33131186 (+)

Expression


Co-expression Network