AMCG00004020 (pou3f2,LOC106584047,LOC106605033)


Basic Information

Item Value
gene id AMCG00004020
gene name pou3f2,LOC106584047,LOC106605033
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29698040 ~ 29699320 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004020
ATGGGAGGCGAGGCGAGGCGGAGCTCAGGTGCTCGCCGCTGCGTCCACTTGGCCAAGAGCCTGGGAGACGCCTGTGGCAAAAAAGTAACTGTCAAATGCACGGCTCCTTTAACAAGAGCGATCAGTCCGGCTCCGAGAGTCATGGCGACCACAGCGTCTAATCATTACAATATCCTCACCTCCAGCTCCTCCATCGTGCACTCGGAGCCCGGGAGCATGCAGCAAGGGACGGCGTACCGAGATGCACAGACACTGTTGCAGAGCGACTATACCCTGCAGAGCAATGGTCATCCTCTCAGCCACGCACACCAGTGGATAACGGCACTGTCACACGGAGACGGGGCTCCCTGGTCCACCAGCCCCTTGAGCCAGCAGGACATAAAGCCCGCTGTGCAGAGCGGCAGGGACGAGCTGCACAATTCAAGCAGTTTGCAACATCAGCCGCGACCGCCTCATCTGGTGCACCAGCCGCATGGGAACCATCACGACGCAAGGGCATGGAGGACTACCACAGCAGCGCACATCCCGAGCATGGCATCAACTAACGGACAGAGTCTTATATACTCACAGCCTGGGTTCGAGGCCCTGCAGCTCAGTTTTAAGAACATGTGCAAGCTCAAGCCTTTGTTGAACAAGTGGTTGGAGGAGGCAGATTCAACTTCTGGGAGTCCCACCAGCCTGGACAAGATAGCAGCGCaggggaggaagagaaaaaagcGGACCTCCATCGAGGTAAGCGTCAAGGGGGCTTTGGAGAGCCATTTCTTAAAGTGCCCCAAACCTTCAGCCCCAGAAATCACTTCGCTAGCGGACAGTCTTCAACTGGAGAAGGAGGTGGTCAGGGTTTGGTTTTGTAACagaagacagaaagagaaaaggatgACCCCTCCCGGAGGAGCCCTCCCAGGACCGGAGGATGTGTATGGGGACACTCCGCCACACCATGGGGTTCAGACTCCTGTACAATGA

Function

symbol description
pou3f2 Enables identical protein binding activity and sequence-specific double-stranded DNA binding activity. Acts upstream of or within positive regulation of cell population proliferation. Located in nucleoplasm.

NR:

description
PREDICTED: POU domain, class 3, transcription factor 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004020 True 969 mRNA 0.57 2 29698040 29699320

Neighbor

gene id symbol gene type direction distance location
AMCG00004019 NA coding downstream 151939 29538992 ~ 29546101 (-)
AMCG00004021 NA coding downstream 171530 29513010 ~ 29526510 (-)
AMCG00004018 prdm13,LOC106583971,LOC106605027 coding downstream 191042 29500845 ~ 29506998 (-)
AMCG00004005 NA coding downstream 500865 29190680 ~ 29197175 (-)
AMCG00004004 LOC100304755 coding downstream 579335 29108945 ~ 29118705 (-)
AMCG00004022 LOC106581764 coding upstream 11657 29710977 ~ 29880791 (-)
AMCG00004034 klhl32,LOC106584066 coding upstream 333245 30032565 ~ 30045392 (-)
AMCG00004035 klhl32,LOC107704937,LOC107587857 coding upstream 359359 30058679 ~ 30077713 (-)
AMCG00004033 NA coding upstream 417119 30116439 ~ 30124017 (-)
AMCG00004032 NA coding upstream 450992 30150312 ~ 30156711 (-)
G5076 NA non-coding downstream 428119 29183092 ~ 29269921 (-)
G5032 NA non-coding downstream 687231 29007691 ~ 29010809 (-)
G5012 NA non-coding downstream 722773 28974978 ~ 28975267 (-)
G4982 NA non-coding downstream 805008 28892682 ~ 28893032 (-)
G4966 NA non-coding downstream 999016 28698475 ~ 28699024 (-)
G5181 NA non-coding upstream 403125 30102445 ~ 30102654 (-)
G5194 NA non-coding upstream 413063 30112383 ~ 30115011 (-)
G5269 NA non-coding upstream 838616 30537936 ~ 30538437 (-)
G5273 NA non-coding upstream 853657 30552977 ~ 30553218 (-)
G5315 NA non-coding upstream 1043459 30742779 ~ 30743167 (-)
AMCG00004006 NA other downstream 368925 29324741 ~ 29329115 (-)
AMCG00003967 LOC107095448 other downstream 2828462 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 3699412 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 3796428 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 5401794 24263907 ~ 24296246 (-)
AMCG00004038 LOC105015767 other upstream 485298 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 574486 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 1114461 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 1270359 30969679 ~ 30973496 (-)
G5502 NA other upstream 2610160 32309480 ~ 32309910 (-)

Expression


Co-expression Network