AMCG00004021


Basic Information

Item Value
gene id AMCG00004021
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29513010 ~ 29526510 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004021
atgaaacagtaCAATGTGTCAATACAGTTTGGTGGGTCCCTGTCTCCTCCAGCAGCCAGCAGCACccagaagaaaaggaagacaaCAAAACACAGTGTCAAAATGAGCTGCAGCCCAGAGAGGATTTCTTCATACCGTCGCCATTTCGAGGATGGCATCTCCTCTTCCTATCAGGTGCGGGTGTCCAGCCCCTCTCCCCCTCGCACCAGGGAGGCCAGGCACCGCTCTGCCAGCTACTCCCGCACGGCCTCCACCAGGAGAACAAGCTCAGCAACTCTCAGACCTCGCATAGGCAGCATGGGGGCAATCTGTCTGGGTGCTGGGATGGGGCCAGCTCTCGATCTGGATGCAGCTGCTGCGGAGAACCAGGCATTCCTGAGCACAAGGACCACTGAGAGGCAGGAGATGGTCCGCAACTTGGAGCAGCAGAACAAGCTGCTGGAGGCGGAGATCGAAGCCCTGCAGCAGCGCTTTGTCAAGCCGTCCGGACTGAGGGTCCTTTATGAGGAGCAGCTCCGGGAGCTGAAGAAGATCGCTGATCAGATGAGGATGCAGCGGGACATGTCTATAGCAGCTAAAGAGGCGGTGACTGCCCAGCTGGAGGCACTGAAAGTAAAATATGAAGAAGCCTTTGAGGCCAGAAAGAAAGCCGAACAGGAGATCGAAGCTTTCCGCCCAGATGTGGACGCCGCTACATCTTCGCGCATTGCCCTggagaaacaacaggaaaaccTTGAGGTGGAAATCGCATTCCTCCAGAGGGTCCACAAAGAGGAAATCGAAGAGCTCATGAAACAGATTTACAGTGTGGTGACCACTGTGGACATCAGCTTCTCCCTGCCTGACCTGGCCGCTGCTCTGAAACAGATCCAGTCTCAGTATGACGACATCGCTGCCAAGAATTTACAgATCCAGAGCAAAGAGCGGGAGCTGGAGAACCTTAAAATCAGGAACGCGGCTCTGGAGGCGCAAATCCGCGACGCGCAGGAGAAATACAAGAAGGAGATTGAAGATCTGCAGgaAAAGATAAAGAGACTCCAGGAAGAGTTAAAATCCACAAAGGAGAAAATTGCTCTTCATCTCCGTGAATACCAGGACctactgaatattaaaatggctcTTGATATTGAAATCACCACATACAGGAAGCTGATCGAGGGCGAGGACTCCCGGCTGGCCTGCCTGGTCAGCAGCCCGCAGCTGATGAGCGGCATGCTGGGGCAGATGGGGGCCATCGAGAGCATCTCCAATGAACAAGCCGTGGAGATGACTGAGAGGAAAACTGTTCTCATCAGAACAGTTAAAACAGAAGATGACACTTTGCAGAAAGATACCCAAGAACGGACGATAACCATTTCCGACAGTAACACATAA

Function

GO:

id name namespace
GO:0048570 notochord morphogenesis biological_process
GO:0060035 notochord cell development biological_process
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004021 True 1374 mRNA 0.53 12 29513010 29526510

Neighbor

gene id symbol gene type direction distance location
AMCG00004018 prdm13,LOC106583971,LOC106605027 coding downstream 6012 29500845 ~ 29506998 (-)
AMCG00004005 NA coding downstream 315835 29190680 ~ 29197175 (-)
AMCG00004004 LOC100304755 coding downstream 394305 29108945 ~ 29118705 (-)
AMCG00004001 NA coding downstream 431418 29046131 ~ 29081592 (-)
AMCG00004000 LOC104961995 coding downstream 510506 28979027 ~ 29002504 (-)
AMCG00004019 NA coding upstream 12482 29538992 ~ 29546101 (-)
AMCG00004020 pou3f2,LOC106584047,LOC106605033 coding upstream 171530 29698040 ~ 29699320 (-)
AMCG00004022 LOC106581764 coding upstream 184467 29710977 ~ 29880791 (-)
AMCG00004034 klhl32,LOC106584066 coding upstream 506055 30032565 ~ 30045392 (-)
AMCG00004035 klhl32,LOC107704937,LOC107587857 coding upstream 532169 30058679 ~ 30077713 (-)
G5076 NA non-coding downstream 243089 29183092 ~ 29269921 (-)
G5032 NA non-coding downstream 502201 29007691 ~ 29010809 (-)
G5012 NA non-coding downstream 537743 28974978 ~ 28975267 (-)
G4982 NA non-coding downstream 619978 28892682 ~ 28893032 (-)
G4966 NA non-coding downstream 813986 28698475 ~ 28699024 (-)
G5181 NA non-coding upstream 575935 30102445 ~ 30102654 (-)
G5194 NA non-coding upstream 585873 30112383 ~ 30115011 (-)
G5269 NA non-coding upstream 1011426 30537936 ~ 30538437 (-)
G5273 NA non-coding upstream 1026467 30552977 ~ 30553218 (-)
G5315 NA non-coding upstream 1216269 30742779 ~ 30743167 (-)
AMCG00004006 NA other downstream 183895 29324741 ~ 29329115 (-)
AMCG00003967 LOC107095448 other downstream 2643432 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 3514382 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 3611398 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 5216764 24263907 ~ 24296246 (-)
AMCG00004038 LOC105015767 other upstream 658108 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 747296 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 1287271 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 1443169 30969679 ~ 30973496 (-)
G5502 NA other upstream 2782970 32309480 ~ 32309910 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_07035705_07039313 NGS coding CI01000020 null 7035542 ~ 7039313 (-)