AMCG00004022 (LOC106581764)


Basic Information

Item Value
gene id AMCG00004022
gene name LOC106581764
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29710977 ~ 29880791 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004022
ATGTTTGATGGTGTGTCGGAATTTTATGCCAGTTTTGATCTACGCGGTGCTCATGGTTTATCGCATGATCCCATGCCACTGAAAGACTCAAGCAATGGACATGGGACTCGCTGTGCCGGAGAAGTGGCAATGGAAGCAAACAATTCCTTTTGTGGGGTTGGTATTGCATTTAATGCTAGGATCGGTGGCATTCGCTTGCTGGACGGCTCTGTGACTGACTCAATGGAAGCAACATCTCTGACTTACAATAATGACTTCATTGATATTTACACCTGCTGCTGGGGACCAAAGGACAATGGGAAGGAGATGGCAGGACCAGGCAAACTCACAGATAAAGCATTACGACTGGGAAAAGGCAACATCTTTGTGTGGGCTTCTGGCAATGGTGGCATGGTTAATGATCACTGTGGAGCAGATGGTTATGTCAACAGTATCTACACCATTGCCATTGGAGCGATTTCACACAACAGTCTCCCGGCCTTCTTTGGTGAACCTTGTCCAGCAGTCATGGCAGTCACTTTGACTGGTTCTTCCAGTGGAGAAAGCCTTCCTCTCGTAACAGCCACTAATGTGGACGAGGGCTGTGTTACACACTTCACCGGCACGTCCAGCGCAGCACCCATCGCCGCTGGGGTTCTGGCCCTCGTTCTGGAAGCAAAgatgtcACagtTTATGGTGGAAATGGACAAACCTAAATTCTTGCCCCGGGTCACTGACAACAAAGATACAGCTATCAGATGTTTACGAAATAATGAACACCAAAGCCTGGTTTCCATGGGAGAAACATATCAAATCAACATGGACAGCAAAGAGCTGAAAAGCGATTATTCTCAACAAGGTATCATTGAAAAGGAATTTGAAATGGAGAACCTGAATAAGGGGCTGGACCCTAAGGTACTGCAAAGGTACCTGACGGGTGACTCAAAACTGCACATCATGACAGACAACTCTGCAAGGATCATGGAAATGCGGAGCAAACTGGAGcaGCAGGAACTGCACTTTTCTTTCTGGACTGAT

Function

NR:

description
PREDICTED: PC3-like endoprotease variant B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004022 True 1017 mRNA 0.47 13 29710977 29880791

Neighbor

gene id symbol gene type direction distance location
AMCG00004020 pou3f2,LOC106584047,LOC106605033 coding downstream 11657 29698040 ~ 29699320 (-)
AMCG00004019 NA coding downstream 164876 29538992 ~ 29546101 (-)
AMCG00004021 NA coding downstream 184467 29513010 ~ 29526510 (-)
AMCG00004018 prdm13,LOC106583971,LOC106605027 coding downstream 203979 29500845 ~ 29506998 (-)
AMCG00004005 NA coding downstream 513802 29190680 ~ 29197175 (-)
AMCG00004034 klhl32,LOC106584066 coding upstream 151774 30032565 ~ 30045392 (-)
AMCG00004035 klhl32,LOC107704937,LOC107587857 coding upstream 177888 30058679 ~ 30077713 (-)
AMCG00004033 NA coding upstream 235648 30116439 ~ 30124017 (-)
AMCG00004032 NA coding upstream 269521 30150312 ~ 30156711 (-)
AMCG00004036 NA coding upstream 294768 30175559 ~ 30188592 (-)
G5076 NA non-coding downstream 441056 29183092 ~ 29269921 (-)
G5032 NA non-coding downstream 700168 29007691 ~ 29010809 (-)
G5012 NA non-coding downstream 735710 28974978 ~ 28975267 (-)
G4982 NA non-coding downstream 817945 28892682 ~ 28893032 (-)
G4966 NA non-coding downstream 1011953 28698475 ~ 28699024 (-)
G5181 NA non-coding upstream 221654 30102445 ~ 30102654 (-)
G5194 NA non-coding upstream 231592 30112383 ~ 30115011 (-)
G5269 NA non-coding upstream 657145 30537936 ~ 30538437 (-)
G5273 NA non-coding upstream 672186 30552977 ~ 30553218 (-)
G5315 NA non-coding upstream 861988 30742779 ~ 30743167 (-)
AMCG00004006 NA other downstream 381862 29324741 ~ 29329115 (-)
AMCG00003967 LOC107095448 other downstream 2841399 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 3712349 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 3809365 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 5414731 24263907 ~ 24296246 (-)
AMCG00004038 LOC105015767 other upstream 303827 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 393015 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 932990 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 1088888 30969679 ~ 30973496 (-)
G5502 NA other upstream 2428689 32309480 ~ 32309910 (-)

Expression


Co-expression Network