AMCG00004024 (rwdd1,LOC107587776,LOC107704860,LOC106579327)


Basic Information

Item Value
gene id AMCG00004024
gene name rwdd1,LOC107587776,LOC107704860,LOC106579327
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30111086 ~ 30114969 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004024
CATCTGCGTTTTTCTTTGTAATCAATGGGAAATTGGGAGAAAAAATGACAGATTACGGAGAGGAGCAGCGGAACGAGTTGGAGGCATTGGAGTCCATATATCCGGATTCGTTTACAGTGCTTTCTGAAAATCCTGCCAGTTTTACCATTACTATGACATCTGATCCAGGAGAAGATGATGAGACTGTTCAGACAACTTTAAAGTTTACATATGTAGAGAAGTATCCGGACGAACCTCCACTTTATGAAATATTTTCACAGGAGAACCTTGAAGACAGTGATGTCAAATCTATTCTTGCATTATTAGAACAACAGGCAGAAGAAAATCAGGGAATGGTGATGATTTTCACATTAGTAACTGCAGTGCaggagaaattaaatgaaattgtcGATCAGATAAAGAACcgaagggaggaggagaagaggaggaaagagaaagaggctGAGGAAGCAGAAAAGGTACAATTCCATGGCACACCTGTCACAATTGAAAGTTTTCTCTCATGGAAAGCTAACTTTGAAATTGAGATGTCCGAACtaagaagaaaaagacagaaagaggagGACATGTcagggaaaaacaaacttaCTGGGAAAAAGCTATTTGAAACGGACCATAATCTTGACACATCTGACATCAAATTCCTTGAAGAAGCTGGAAATAATGTAGAAGTAGATGAGTCTTTATTCCAGGACATGGATGATCTGGAGCTGGATGAGGATGACCCAGATTTTGATCCAGTTGGCTTAGGTAGCGATGAGGACTAGTCAATGAAACCTGCCCCgtcaaaatgaatgaaaaactaCACGGACAGCTACAGTATCTGTGGCTGAGCATAACCCAGCATGATGACacccattttcttttaaatctaaaaagtttataatttcattggctgtaattaataaatgtgttaacatttaaaaagagccTGAGGTAATGATCATATTCATTATTGATCTTTGGAGGAGGGGGAGTTTTAAATTGGTTCACTCTAGCCTTACCTAAACTTATCTTTAATCCCTGcaacattttcttctgaaatgttaaaaagagTGGCGGGGGTGGCAGTTATTAGGCCAACATTTTTTTTGAGGGACATGACAGACTTTGAGTGGTTCATAAAGTGTCACAGAACCCTGagacatatatacagtatatttaattgtacagGAAGTTCACCTTTATGCACTACCCATATTAATCAGGAGATGGCAGCATTTAGTTTTACAGATCAATTTGTGGAatatttttcaaagttttttttctttcctttttaaatcgAATTGttgcctttaaaacacattaaaacaattgaaattcATA

Function

symbol description
rwdd1 Predicted to be involved in cytoplasmic translation. Predicted to be part of polysome. Orthologous to human RWDD1 (RWD domain containing 1).

NR:

description
PREDICTED: RWD domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004024 True 1326 mRNA 0.37 7 30111086 30114969

Neighbor

gene id symbol gene type direction distance location
AMCG00004027 NA coding upstream 13366 30094302 ~ 30097720 (+)
AMCG00004023 NA coding upstream 112402 29983613 ~ 29998684 (+)
AMCG00004013 NA coding upstream 429492 29663803 ~ 29681594 (+)
AMCG00004012 NA coding upstream 484568 29613189 ~ 29626518 (+)
AMCG00004015 NA coding upstream 499556 29600561 ~ 29611530 (+)
AMCG00004026 NA coding downstream 16267 30131236 ~ 30137944 (+)
AMCG00004025 NA coding downstream 42393 30157362 ~ 30167872 (+)
AMCG00004029 cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244 coding downstream 86219 30201188 ~ 30202790 (+)
AMCG00004030 NA coding downstream 111664 30226633 ~ 30229627 (+)
AMCG00004037 NA coding downstream 139401 30254370 ~ 30255135 (+)
G5185 NA non-coding upstream 2046 30108841 ~ 30109040 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding upstream 411862 29697667 ~ 29699224 (+)
G5129 NA non-coding upstream 425543 29684227 ~ 29685543 (+)
G5085 NA non-coding upstream 749407 29354521 ~ 29361679 (+)
G5005 NA non-coding upstream 1158021 28952553 ~ 28953065 (+)
G5191 NA non-coding downstream 7126 30122095 ~ 30123181 (+)
G5198 NA non-coding downstream 30886 30145855 ~ 30146557 (+)
G5248 NA non-coding downstream 160139 30275108 ~ 30276282 (+)
G5271 NA non-coding downstream 430318 30545287 ~ 30545525 (+)
G5272 NA non-coding downstream 438008 30552977 ~ 30553214 (+)
AMCG00004011 ccnc other upstream 569728 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1427105 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1525412 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1645440 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1711345 28379811 ~ 28399741 (+)
G5245 NA other downstream 156241 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 181898 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 773026 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2285436 32400405 ~ 32402383 (+)
G5642 NA other downstream 3015151 33130120 ~ 33131186 (+)

Expression


Co-expression Network