AMCG00004025


Basic Information

Item Value
gene id AMCG00004025
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30157362 ~ 30167872 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004025
GCCATATTGCGCTCAGCTGTAGAAGCAACCTGGGAAAGGCAGTGGCGAGGAATACAACTACGCAATTATCAAGTGCACAGACTAGTAAATGGACACAATGGCAAGCCCAGTTACAGATAATTGTCGAATGAAGAGTTACAAGAACAAGGCCCTGAATCCCCAGGAGATGCGAAGACgaagagaagaagaaggaatTCAGCTACgaaaacaaaagagagaggAACAATTATTTAAAAGAAGGAATGTTTCGCTTCCTGCTAACGAGGATTCAATGCTAGAATGCCCCATACAAGATCCGGATGTAAACTCTACAGTGCCTATTGCCGATgaagGGGTGATAACGCCTGATATGATTCAGATGCTTTTCTCAGAAGATCCGGACCAGCAGCTCATAGCAACTCAGAAATTCAGGAAATTACTGTCCAAAGAACCCAACCCTCCGATAGATGAAGTTATTCTTACACAAGGAGTTGTAAACCGTTTTGTAGAGTTCTTAAAAAGAAGTGAAAATTGTACATTACAGTTTGAAGCAGCATGGGCATTGACAAACATTGCATCTGGAACCTTTCTACATACTAAAGTGGTTATTGAAACGGGTGCAGTCCCCATTTTTATAGAGCTTCTCAATTCAGAATATGAGGATGTACAGGAACAGGCAGTTTGGGCCCTGGGCAATATTGCTGGGGACAATGCAGAGTGCAGAGACTATGTGCTGAACTGTGGAATACTTCCATCTCTTTTACAGCACAGCGATTACAAGGTGGTTTCTCCTGCTTTAAGAGCAGTAGGCAACATAGTAACTGGAGATGACATTCAGACTCAGGTGATTCTTAATTGCTCTGCATTACCCTGTCTTTTACATTTACTGAGTAGTCCTAAAGAGTCTATAAGGAAGGAAGCCTGTTGGACAGTATCCAATATTACTGCAGGGAACAGAGCTCAGATTCAGGCTGTAATAGACGCAAACATTTTCCCAGTACTAATTGAGATCCTTCAGAAGGCTGAGTTTCGAACCAGAAAGGAAGCAGCCTGGGCGATTACCAATGCCACCTCGGGAGGAACTCCTGAGCAAATAAGGTATTTAGTGTCCTTGAATTCAATCAAGCCACTCTGTGACCTCCTTACAGTCATGGACTCTAAGATCGTTCAGGTTGCCCTCAACGGGCTTGAAAACATCCTCCGACTGGGAGAGCAAGAAGCCAAACAGAATGGCTCAGGCATGAATCCGTACTGTTCCCTTATCGAGGAAGCATATGGACTGGATAAAATTGAATTCTTACAAAGCCACGAGAATCAGGAGATCTATCAGAAGGCCTTTGACTTGATTGAGCACTACTTCGGTGTGGACGTGGAGGACTCCAGCATCGCCCCCCAGGTGGATGAGGACCAGCAGCAGTTCTTGTTTCCCCAGCAGGAAGCCCCAATGGAAGGATTCCAGCTTTAACTTCACCCCCTGGTCAACCTGAAGCCCTTTCAGTTATTCGTGCACCAGGCTCTCCATGTTGTCGAAGGTGAACGCTCTACTTTGTGGGGTGACACCAGaaccacaaaagaaaaaaaaaaaaaagaatttagaAGTCTAAATGTGAGGCAGCTCAAGCACCGTTTGggtggattttcttttcttaggGCAACACTTAGCATTTCTATTGCATTACTTCTATATTTTGCCTTTGATTTTGGTTTCCCCTTAGTGTGATCTGTTAACCCTACAATAGCAGCtaggaaatgtatatacatatgtaaagcttttttgtttgtttttgtattttacatagtcatattaaaactgaaactgttTAACACTGGTATCTGCACATTAGCCTCTGAACCCCTTCAGAATGTAAACTACCTCTATCACGaaccaacattttaaataggatTACAAGAATACATGTGCATCGTGGAATGATTAAGGATACATTCACATCAAGGTGAATTcgaatgtaaaaatgtacaataaaaaggACATACAATAGGTATGTATTGAACCTGATTTCAATGAACAATAGAGACTGGATTTCTCTTATTCAACTGCATGGTTTAtttcatgctttgtttataaaagttacagcaacatattttttttaaaccattcaaCCTTATATCTATAGCTGattcagaattaaatatatatatatatatatatatatatatataccagtatGATAACACCATTTAGAGTTCAAACTTGAAAAGAACAACTGCACttcattgtcattttttaaattgaaaattagGATTTGCATGGTTTGTACAGTATTTTGACCATGCATTTGACATTCTCTATTTACCTTATTTATTCTGTTGAAAGAATCCTTCTGCAAATTAAGACTTCTTTTGAATAACTAAAGTACAACATACTGCTATGCAGCAGTGCCactaaacatttttgtttgctgaaaGATATTTGCTATAGTTAAATTTCATTGCTTCATTGCTGTTCATTACTTTATATTAAGGTAAAAGGCAGAACAGtagacaatttttttttaatggattcaGTTAGTAACGACAGAATATTTgctttcagatgtatttattttctattttttggaATGATCTCttaataattttgtttctcCTGAGACTGAAGCTAAAACAATGAACTTGACTTTATGGATGTGCATGAGCCATGGCTTCATTAGCTACTATAATACTCCATGCATTTACAGTTTAGCTATATCAATTTtagttgttaaatatttataaatgctttgtatattatatatacatttaagcaAAAAAGACTTTGTaaactataaaaacatataatctAAGTGATATCGATATCCTAgtcattgtttaatttgttattgataaaataacattgtctTCCTTTAATTGTACTTTGTGACCTATTACTTTAAATCATTGCTTAGATGATTTTTTATCTGTTGGATATCGATGTCAAAGTCATTTTCTTGGGCTAGCTGTAATTTATATGGGTAACTTAATATTTGGAATGTAAAACGACCGTCATCAAGAACAGTCAAAgttttagtttggttttgttttctctcataCTGTGAAAgtgtaatattttgttttacacattagCTAACATTACCTTGTATCAtctaattaatgtaaaatttaaatttataggactgttttggaaaaagaaatgcacaaataaaatgagTGCAATGCAGTGCTTTTATAACTGCATATTGCTTCTTGTTTACTGAGTTTTAGTGTCAAGTATACCTCACCTTTAGAGTTGCATTGTCAATGTTATGAGTAACTcaacaaagcagaaaatgtgAATTTACATTACAATccgtttttacattttacttgcTTTCTTCCCCACATTGTGTGGGGAAATTGGTCTACTATCAGGTTATGACTACTGTATATGCACATTGCAATTCATCTTTGTGTTATGAATTTATTTCTAGAGGTAAAGTTAATTTAttggaaaattataattatttactgaTGCCTAATGAGCAGTGGAAACACGCTACTCaaattgtgattaaaatattaTCAGTTTAAAAGTGAGGATGTTCTCATAATTTAAAGCCAAAAGTTACACcatagtttaaaattaattatatatttgtatgcactTACTATAACTTTTTATCTGTTTTGAAACATGAGATCCAACCCTGTCATATTTATCAGCTATGGCATAGCCTTTTTACCCCCATGTGTATGCAATTAAAagcataattgtttttcttttatctactttatttttcaccctactgttgaaatacacattttcgtTTCTGTGCATGTTGTGTAATATGATGAGTTTAGTTACATATAAGAATAGACTTGgttgat

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004025 True 3801 mRNA 0.36 12 30157362 30167872

Neighbor

gene id symbol gene type direction distance location
AMCG00004026 NA coding upstream 19418 30131236 ~ 30137944 (+)
AMCG00004024 rwdd1,LOC107587776,LOC107704860,LOC106579327 coding upstream 42393 30111086 ~ 30114969 (+)
AMCG00004027 NA coding upstream 59642 30094302 ~ 30097720 (+)
AMCG00004023 NA coding upstream 158678 29983613 ~ 29998684 (+)
AMCG00004013 NA coding upstream 475768 29663803 ~ 29681594 (+)
AMCG00004029 cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244 coding downstream 33316 30201188 ~ 30202790 (+)
AMCG00004030 NA coding downstream 58761 30226633 ~ 30229627 (+)
AMCG00004037 NA coding downstream 86498 30254370 ~ 30255135 (+)
AMCG00004028 cmtr1,LOC107682822 coding downstream 90600 30258472 ~ 30270198 (+)
AMCG00004045 NA coding downstream 537268 30705140 ~ 30722327 (+)
G5198 NA non-coding upstream 10805 30145855 ~ 30146557 (+)
G5191 NA non-coding upstream 34181 30122095 ~ 30123181 (+)
G5185 NA non-coding upstream 48322 30108841 ~ 30109040 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding upstream 458138 29697667 ~ 29699224 (+)
G5129 NA non-coding upstream 471819 29684227 ~ 29685543 (+)
G5248 NA non-coding downstream 107236 30275108 ~ 30276282 (+)
G5271 NA non-coding downstream 377415 30545287 ~ 30545525 (+)
G5272 NA non-coding downstream 385105 30552977 ~ 30553214 (+)
G5291 NA non-coding downstream 572692 30740564 ~ 30740873 (+)
G5297 NA non-coding downstream 610175 30778047 ~ 30778270 (+)
AMCG00004011 ccnc other upstream 616004 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1473381 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1571688 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1691716 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1757621 28379811 ~ 28399741 (+)
G5245 NA other downstream 103338 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 128995 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 720123 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2232533 32400405 ~ 32402383 (+)
G5642 NA other downstream 2962248 33130120 ~ 33131186 (+)

Expression


Co-expression Network