AMCG00004027


Basic Information

Item Value
gene id AMCG00004027
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30094302 ~ 30097720 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004027
GGGAAACTCCCAAGACAACTACTTAGCCTCTGCAAAAAGCTTCAATAAGCAAGTGCGTGTTGAAACACACATCCAGGAAGTGGACGAGCACAGAGACGCAAAACAAGGTCGTGAGACACAAGAGGACACTTCTTATCTGCCATCTGTGTCTGAATGCGACATGGATAAATTTGGCACTGTTTTCAGCGTTTTCCAGAAGCAGCAGACCAGCTTGGGGTTTGGGTTAGTGGCTTTGCTGACTGCCGGCGGGGAGCAGATCTTCTCGGCGGTGGTCTTCAAGTGTCCTTGCAGTTCGTGGAGCTTCGCCTACGGCAGTGTGTTTCTCTTGGTCCCCGCTCTTGTGTTGCTGATGTTGGGCTACATGCTCAGCGACAGGACGTGGAAGTTATTTACCGGCGTCTGCATTGACGACAACAGTGTATGTCGGAAAGGAAAGTTGTGCGcctgttttaaagtgtttgcgCTAATAAGTGTAAAGGCGATGGTAGCGCCGATCAGCTGGATTGCAGTTGCCCTTTTGAACGGCAGCTACTTTGAGTGTGCAATGACCGGGTTGAATAGCACCTTGTacactgctgctgtttgtgaAGGGAAACCCAGGGCTTGTGAAGAAGAGCTTCAGAGGGTTCCTTGCGGAAAATCCTCCATGTCTTCATCTGACAGTCAAGATGTCTTACTGATTATAAAAGCACAGTCGCAGACGCTGGGTTGGGTGGTCATTGCCTCCATCATGGTCTCCGGCCTTGTCCTCACCTGCATGGCGCGATGTCGTTCCCCTGTCAGCTACCTACAGCTCCGCTTCTGGAGGGCTTACACCCAGAGTGAGAATGACCTCTTCGAGAAGATGTCCTCAGAACATGCGAGAAAGCTGGCCGAGCGAAATCTGACGAGTTTTTTTCAGTTGAGGCAACCTGCTCCAATGGAAACACCTGATGCCAAAGCCTGGAAAAAGATCTCATCCCTTTACAAATTCGGCAACACGGATCATTATTACAGTAATCTACACAAGTATGTAGAAACACACTCAGATCATGCTAGATTATCAGTAAAGTCTGAAGAAGGTGATTTTGTTAATCCATCAGTTCTGGCCTTTGTAGATGATggcaaatctgttttttaatatatttgtaatgtaatgtacctGAATATAgcaaatataatgaaatatcacattttatatagataattctaactgaaactgaaactcacagttggatatatttatattttgatttatattggtATGAATTGAAACATGTATGCATTCTGAGCATATGTAATTTCTGTTGCTGCTTTTTGCTAtgtcttttataaaaaaaaatctactgttAAAGTTGGATAATTTATGATAAGAGTCCTCAGCAGAATATAAAGAGTTTACATGTAGTGTTGAGCATTTgctaataaataacaaaacgtttttaaatataatatcctggtttgtatatatttatatatatatatatatataatcacatgtacatgtgtataatatataaataatgtaaggaATAAAACAGTCTGAAGCTGAGGAAATTCCACCCTAGTAAAATTCCACAGTTTAAAGTCGTCTCCCCAAATGTTCCTGGGTGTCGTCCTGATTCACAGGGGTGAACACAGGGGCTGAGGGAGGGGGTCTCTGGTGTCGATAACGTAACAAAAGGTTAATAATGAGACAGTCTGTCTACCAGtcttgtatcaatagcatatcaaaagctattgacAAAGCCTGTCTAACATCACCTTGTATgctaataggcagctgccattggctACTTTGGTAGGTGGGTTGGTCACTCGGGTCAAAGGATTTAATGGATACTAAAAATCAAATGAGCCACagttgcattttgaaatgtttttttttaatcttatgtatatatgtgtttgttgctGTGAGTATGTTAAATACGTTAAATCAAACAAGGACCTGctgttttgtggtttgtgtATTTGCTTCTGTGAAAGAGGAATCAAAACCATCTATACATTGatgaaatgctgaaatataATGATACAGCACAATCTTGAAACCACATATATTGCTTCCTCCTCTATTCCAATAAATATGTTGGCATCAGTAAGCTTTTTTGTGCTGCCTTTCTGAGTTtctacttgtttattttttgttgcgTTTCTTTTAGCTATGGGCGCAGTGTTTCATTAGGTCACTAAATTGCTGGTTGGATGATTATTTCTTTCTGTTGTCCTTGTCATTTTTGTTCTATGCCAGAGTTCAAAATATAATGAACTGTGTATTATCAATTATCacctttctttttattgttcctgtttttttggaCTATATACCGTTCCCTGAATGGGATGCTGAAAGCTGCAGTGccttgttatgttttgtttttaatacattcctTGCTTCACTGACCGTCACGTCTAACCTTAGTTTTCCCCTACAGACATCACCCAAATCAGTGTAAACAACTTGAAAGAAGCAAAAGTAAATAGGaccaaaaaaatacttaatagataatacatttaaaaaaacaaattctgaaCTTGCAACACCAGGTTAATCCGAATTGTATATTTAACTTACTGGCTTTCCAGTTCAATTCCTGATTATGGTCtttttaatcataaattaacttatttgaaaataaatagtaaacTACTCAAACTGTCTTGAGGGATTCATTTAATTGGGGATTTATCTTAATTTCCTCCTTTTCCACTACTTAATACaacagcttttttcttttattttctttcctgtctACACACAAACTTAGATATAACAGAAACCAAACAGGAAACAGCAAAGAAGGAAGGAAATCGTATTAGCAGAtgacatttttggaaaatgtatgttttgtttttaactacattcaat

Function

GO: NA

KEGG:

id description
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004027 True 2851 mRNA 0.39 2 30094302 30097720

Neighbor

gene id symbol gene type direction distance location
AMCG00004023 NA coding upstream 95618 29983613 ~ 29998684 (+)
AMCG00004013 NA coding upstream 412708 29663803 ~ 29681594 (+)
AMCG00004012 NA coding upstream 467784 29613189 ~ 29626518 (+)
AMCG00004015 NA coding upstream 482772 29600561 ~ 29611530 (+)
AMCG00004017 NA coding upstream 496075 29591603 ~ 29598227 (+)
AMCG00004024 rwdd1,LOC107587776,LOC107704860,LOC106579327 coding downstream 13366 30111086 ~ 30114969 (+)
AMCG00004026 NA coding downstream 33516 30131236 ~ 30137944 (+)
AMCG00004025 NA coding downstream 59642 30157362 ~ 30167872 (+)
AMCG00004029 cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244 coding downstream 103468 30201188 ~ 30202790 (+)
AMCG00004030 NA coding downstream 128913 30226633 ~ 30229627 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding upstream 395078 29697667 ~ 29699224 (+)
G5129 NA non-coding upstream 408759 29684227 ~ 29685543 (+)
G5085 NA non-coding upstream 732623 29354521 ~ 29361679 (+)
G5005 NA non-coding upstream 1141237 28952553 ~ 28953065 (+)
G4981 NA non-coding upstream 1201271 28892684 ~ 28893031 (+)
G5185 NA non-coding downstream 11121 30108841 ~ 30109040 (+)
G5191 NA non-coding downstream 24375 30122095 ~ 30123181 (+)
G5198 NA non-coding downstream 48135 30145855 ~ 30146557 (+)
G5248 NA non-coding downstream 177388 30275108 ~ 30276282 (+)
G5271 NA non-coding downstream 447567 30545287 ~ 30545525 (+)
AMCG00004011 ccnc other upstream 552944 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1410321 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1508628 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1628656 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1694561 28379811 ~ 28399741 (+)
G5245 NA other downstream 173490 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 199147 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 790275 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2302685 32400405 ~ 32402383 (+)
G5642 NA other downstream 3032400 33130120 ~ 33131186 (+)

Expression


Co-expression Network