AMCG00004028 (cmtr1,LOC107682822)


Basic Information

Item Value
gene id AMCG00004028
gene name cmtr1,LOC107682822
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30258472 ~ 30270198 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004028
acagagagcgggCGGTCCCGGGGAGGCAGTGGAGCTATACTGCGACATACATGGCACCGAGGCACGGCCATCTCTGTTAGGGAGAAGTCGGGAGAGATGTGCAGGGGAGCGGCCGGGACTGCGCTGTCAACAGTGTGAAAACTGGAGAGTCGATACCGGTCCAGCTCGGTAACAAGAGAGAGGCTTAACCCGCCCCCGGTCTGTCAGAACCACGGCACCCTGAACCGAATCGGGGAAAGACTAGGGAAGCCCGTAGGTCGTGCACTGCCTGCAGGCGTCTGTTCCGAACCGGGCCGAGTCGGGCCGGCGTGCGGGGGGGCAGCGCGGCGGGAATGAGACGGCTGCACTAGTCAAGAGTACATTtcacccccacacacatacacacacacagTCACAGTCATGAAGAAGAGGGCTGATTACGCAGAGCCACacaagaagaagaggaagcGTTGTGAGGAGCTGAGCTCCACCTCGGATGATGATCCTCCGGGGACAAGGCCAGACAGCCAAGACTCCAGTCAGAGTGACTCCCTTAGTGATCCAGAGGACATCAGACCTGGTTTTGCTGCATCTTCAatgtcccagcatgcactgcagccAGCGCCAGTGCTGGAGGGCTCCTCCAGCAACTTCTCCATCTATAACAGTGTCTCTCAAAAACTCATGGCGAAGATGGGTTTCCGTGCGGGGGACGGCCTGGGGAAGTTTGGCCAGGGCCGGCGGGAGATAGTGGAGGCATCTACACAGCGCGGCCGTCGGGGTCTGGGCCTCACATTGCAGGGTTTTCAGGGAGAGCTCAATGTCGACTGGAGGGATGAGCCTGAGCCCAGCGCAGTGGAGGATGTGCAGTGGTTTCCAGAATGCTCCGCTGAGTTCCCCGACTCTGAGGAGCTGACCGAATGGATGATCGTGGGGGAGAGAAAGCTGCGGATAGAAGACGAGACAGAGTTTTGCAGTGAAGAACTTTTACACAGTGTCTTGAAATGCAAGAGTGTGTTTGATGACCTGGAGGGGGAGGAGATGCGTCGTGCTCGGACTCGGTCCAACCCCTACGAGACCATCAGGGGAGCCTTCTTCCTAAACCGagCCGCAATGAAGATGGCCAACATCGACCACGTCTTCGACAACATGTTCACCAACCCTCGTGACGCCGAGGGGAAGCCTCTGACCCGGGACCGAGACGGGGAGCTGCTTTATTTTGGGGATGTGTGTGCAGGGCCGGGGGGGTTTTCTGAGTATGTGCTGTGGCGGCGGCGCTGGCATGCCAAGGGCTTCGGCATGACGCTGCGCGGCGCCAATGACTTCCGTCTCGAAGACTTCTTTGCTGCGCCCAGCGAGCTGTTCGAGCCTTACTACGgGGAGGGAGGAGTGGATGGAGACGGTGACATCACTCGTCCAGAGAATATCAGTGCGTTCCGGAACTTTGTGATGGAGAGTACAGAGCGCCGTGGGCTGCACTTCCTCATGGCCGATGGGGGCTTCTCGGTGGAGGGGCAGGAGAATATCCAGGAGATTCTGAGCAAACAGCTGCTGCTCTGCCAGTTCCTGACTGGACTATCAACGCTGAGGACAGggggTCACTTCATGTGTAAAACGTTTGACCTGTTCACCCCGTTCAGTGTGGGGCTGGTGTACCTGCTGTACCTCTGCTTCGACAGAGTCTCCCTCTTCAAGCCCGTCACCAGCCGCCCCGCCAACTCTGAGAGgtaCTTGGTGTGTCGCGGCCTGAAGCCCGGATCTGACCCAGTGAGGGAGTACCTGTTTTCTGTGAACCTTAAACTGAACCAGCTGAGAAACTCCAACTCTGACGTCAACGAGGTTGTCCCTCTGGAGATTATGAAAGGCGACAGCGACTTCTACCAGCACATGGTCCGCTCCAATGAGAGTCACTGTGCTGTGCAGATTAAAGCCCTGGCCAAGATCCATGCCTTTGTTCGAGAAACgacGCTTTCGGAGGCGAGGCAGGCGGACATTCGTAAGGAGTGTCTGAAGCTGTGGGGGATCCCTGACCAGGCCAGAGtgaccccctcctcctctgacCCCAAGACCAAGTTCTATGAGCTCATTAAGGGCTCTGACATTGAGACTTTCAACTACAAGCCCACCCCACTGAGCACAAGCACGCTAGACAAGGTGCACCATGTCCTGGACTACCGCTGTATCGTGGGAGGGGGAGAGCAGCTGTTCCTGCTCGGCCTGGGGAAGTCCCAGATCTACACGTGGGACGGGAAGCCACCGCTGCGCTGGAAGAAGCTGGAGAATTTCAAGACAGAGCTGCCGAGAGAGACGCTGCTGAGTGTGGAGATTGTGCAGGAGCTGAAGGGGGAGGGCAAGGCGCAGCGCAGGATCAACGCAATCCATGTCCTGGACGCACTGGTACTAAACGGGACAGACGTCCGTGACCAGCACTTCAATCAGCGGATCCAGATGGCGGAGAAGCTTGTGAGAGCCGTGTCCAAGCCCAGCCGGCCAGACATGAACCCAATCCGAGTAAAGGAGGTGTACAGActggaggagatggagaaaatatttgtcagGAGACAGTAGCCCTGGACAATGGCATACAGCAAGAATTCCAAGAAAAAGTTCTTCTACAACAAGCTGACGAAAGAGTCAACCTACGCCCTCCCGGGCAACGCAGTAGCCCCTTTTCACGTCTGTCACTTTGAGCGTCTGTTCTGGGCATGGGAGGATGGGGTCAGAGTTCATGACTCCCAGAGTAGAGTTGACCCTGAGAAGCTGTCCAAGGAGGATGTGCTGTCATACATCCATCAGCACTACCAGCCTTGAGAAAATTCCCCCAAAACCCCAGACCtgagacaccccccccccccatccccagccCTGAGAGGGATATGGGCTGCCCCACCTCGAGACTAACAGCCCCACACCCTCTGATCTAATTCTCCAAACAGACCCTATACTCTATACTCCAGCTCCTTACCCTGAGACACAGCTGACCTCCCCAGTCTCTAATGCCTGAAGTGGCTGTGTCTGCTGCTCTGTGGGAGTCTTGCCTCCCCCACACTGCTTTCTTAGGAACTGGAACCCAACACTGGCTGTGGGACTGGGCCCAGCAGAGCAGCTTTACTGGAAGCTGTGGGATACCCTGGGACACTGGTGATCCCAGTATTGAGGCTTGGTCATACAGACGGCTCACAGTCTGAACTGCTTGGGCTTGGAGGAAATGGTCTTATCGCTACCCTGCTTCTTCATTAGAtatcatttatgtttttcttgcttGATTTCATATCCACTGTCTAGTTTTGAATTGTTCATAAATATGCAGAGGCGCAGTGTTGACAGCAGCGTTCACACGAGTCTCTAAGAGAGTGGTCAGTCCTGCTCTCAGTGCTGCACCTTGCCTGCCAGTGTTGGGGGACACTCTGCTGAACCGTATTTCTGTGGGGTAGCTAGAGGACCTGGCAGCTGTGGCTCAGTGTCCTGTCCTGAGTGTTTGATGGAGCTGTACTGTTCCTCCGGTTCTTTCTCCTCCCCTCCCACTCAGCGGCAGCCCAGCCTGCCGAACCCACAGCCTGTaaaccattttgttattttgtcttttattcaaatgctttttcatgGCGAGCCTCGTCTCCTGGTGTGTCACACAGCTCTGTTCCTGCAGGGCAGCGCAGGGATGCCGTGCTGCACTTCACAGCGGCAGGCTCCTCACGCGCTGCCAGCTCGCACTTCCCTCTGCCTGGCCTActctggttttgtttgtgttgcaggatGTGTTCATACTGATGTCAGCCAgttgaaggaaaaataaaaaatgttttttgtttcaaagaagctgacaaaatattaagaataaaataattttgtgttCTTAAACCCCGGACAAGTATCtcatttcttatattttctctAGCCAACAAGATACCGTTTCTGTTAGTTTTCC

Function

symbol description
cmtr1 Predicted to enable mRNA (nucleoside-2'-O-)-methyltransferase activity. Predicted to be involved in 7-methylguanosine mRNA capping and cap1 mRNA methylation. Predicted to act upstream of or within mRNA processing and methylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human CMTR1 (cap methyltransferase 1).

NR:

description
PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 isoform X2

GO:

id name namespace
GO:0097309 cap1 mRNA methylation biological_process
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0005634 nucleus cellular_component
GO:0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14589 CMTR1, FTSJD2, MTR1; cap1 methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004028 True 3907 mRNA 0.55 24 30258472 30270198

Neighbor

gene id symbol gene type direction distance location
AMCG00004037 NA coding upstream 3337 30254370 ~ 30255135 (+)
AMCG00004030 NA coding upstream 28845 30226633 ~ 30229627 (+)
AMCG00004029 cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244 coding upstream 55682 30201188 ~ 30202790 (+)
AMCG00004025 NA coding upstream 90600 30157362 ~ 30167872 (+)
AMCG00004026 NA coding upstream 120528 30131236 ~ 30137944 (+)
AMCG00004045 NA coding downstream 434942 30705140 ~ 30722327 (+)
AMCG00004050 NA coding downstream 511856 30782054 ~ 30802209 (+)
AMCG00004049 NA coding downstream 534893 30805091 ~ 30807233 (+)
AMCG00004051 bpnt1 coding downstream 572522 30842720 ~ 30849036 (+)
AMCG00004059 NA coding downstream 626878 30897076 ~ 30913151 (+)
G5198 NA non-coding upstream 111915 30145855 ~ 30146557 (+)
G5191 NA non-coding upstream 135291 30122095 ~ 30123181 (+)
G5185 NA non-coding upstream 149432 30108841 ~ 30109040 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding upstream 559248 29697667 ~ 29699224 (+)
G5129 NA non-coding upstream 572929 29684227 ~ 29685543 (+)
G5248 NA non-coding downstream 4910 30275108 ~ 30276282 (+)
G5271 NA non-coding downstream 275089 30545287 ~ 30545525 (+)
G5272 NA non-coding downstream 282779 30552977 ~ 30553214 (+)
G5291 NA non-coding downstream 470366 30740564 ~ 30740873 (+)
G5297 NA non-coding downstream 507849 30778047 ~ 30778270 (+)
AMCG00004011 ccnc other upstream 717114 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1574491 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1672798 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1792826 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1858731 28379811 ~ 28399741 (+)
G5245 NA other downstream 1012 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 26669 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 617797 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2130207 32400405 ~ 32402383 (+)
G5642 NA other downstream 2859922 33130120 ~ 33131186 (+)

Expression


Co-expression Network