AMCG00004029 (cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244)


Basic Information

Item Value
gene id AMCG00004029
gene name cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30201188 ~ 30202790 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004029
ATGGCGTCTGCTCAGCCGCAGCAGCCCGTCCTGACTGTGGAGCAGGCCAGAGtggtgctGAGTGAGGTGATCCAGGCTTTCTCGGTGCCAGAGAATGCAGCGCGCATGGAGGAGGCGCGGGAGAGCGCCTGCAATGACATGGGCAAGATGCTGCAGCTGGTTTTGCCCGTGGCCACGCAGATACAGCAGGAAGTCATCAAGGCCTACGGCTTCAACAATGAAGGAGAGGGTGTCCTGAAATTTGCCCGACTGGTGAAGATGTACGAGACTCAGGACCCCGAGATTGCTGCCCTGTCTGTCAAACTCAAGTCCCTCCTCCTCCCGCCTATGTCAGCCCCGCCCATGGGAGGAGGTGTCACAGCATCATAG

Function

symbol description
grcc10 Predicted to be involved in post-embryonic development. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in Temtamy syndrome. Orthologous to human C12orf57 (chromosome 12 open reading frame 57).

NR:

description
C10 protein

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004029 True 369 mRNA 0.59 3 30201188 30202790

Neighbor

gene id symbol gene type direction distance location
AMCG00004025 NA coding upstream 33316 30157362 ~ 30167872 (+)
AMCG00004026 NA coding upstream 63244 30131236 ~ 30137944 (+)
AMCG00004024 rwdd1,LOC107587776,LOC107704860,LOC106579327 coding upstream 86219 30111086 ~ 30114969 (+)
AMCG00004027 NA coding upstream 103468 30094302 ~ 30097720 (+)
AMCG00004023 NA coding upstream 202504 29983613 ~ 29998684 (+)
AMCG00004030 NA coding downstream 23843 30226633 ~ 30229627 (+)
AMCG00004037 NA coding downstream 51580 30254370 ~ 30255135 (+)
AMCG00004028 cmtr1,LOC107682822 coding downstream 55682 30258472 ~ 30270198 (+)
AMCG00004045 NA coding downstream 502350 30705140 ~ 30722327 (+)
AMCG00004050 NA coding downstream 579264 30782054 ~ 30802209 (+)
G5198 NA non-coding upstream 54631 30145855 ~ 30146557 (+)
G5191 NA non-coding upstream 78007 30122095 ~ 30123181 (+)
G5185 NA non-coding upstream 92148 30108841 ~ 30109040 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding upstream 501964 29697667 ~ 29699224 (+)
G5129 NA non-coding upstream 515645 29684227 ~ 29685543 (+)
G5248 NA non-coding downstream 72318 30275108 ~ 30276282 (+)
G5271 NA non-coding downstream 342497 30545287 ~ 30545525 (+)
G5272 NA non-coding downstream 350187 30552977 ~ 30553214 (+)
G5291 NA non-coding downstream 537774 30740564 ~ 30740873 (+)
G5297 NA non-coding downstream 575257 30778047 ~ 30778270 (+)
AMCG00004011 ccnc other upstream 659830 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1517207 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1615514 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1735542 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1801447 28379811 ~ 28399741 (+)
G5245 NA other downstream 68420 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 94077 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 685205 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2197615 32400405 ~ 32402383 (+)
G5642 NA other downstream 2927330 33130120 ~ 33131186 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_05757566_05757955 C12ORF57 coding CI01000051 null 5757566 ~ 5758141 (+)