AMCG00004030


Basic Information

Item Value
gene id AMCG00004030
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30226633 ~ 30229627 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004030
ATACTGGAAATGTTTCTCATTGAGCAAGTACCCTTGTCATTGAGGCCAGTATAAATTGCACTGCCTCTTCATTCTGACACCTATTGCAGCTGTGACCCAGAGACAGTGGAGAAACGTCCAGACGTCCAGACTAAACCCAATCTCAACTCAACATGAGGACTATCACTGTGCTTttttctctgctctgtctctACCAGATCTCCACATCTGATGGCAAACAGCAAAAGTGCGATTTAAGAGGGCAGTGGAGGAATGAACTTGGATCCAACATGACCGTGGAGAGTATGAACAATGCTGGCTTCTTCCGTGGCTCCTACATGACCGCTGTGACCACACAGAATGAAATGGTTGTCAAGGTGTCTCCTCTGTCTGGATTCCTGAACATTAATGGCAAATCTACTGTGTTTGGATTCCTGGTCAAATGGAGCTTCGTAGAATCCGTGACATCCTGGGTTGGCCAGTGTTTTGTGGACAGCAATGGCGTTGAGCACCTGGAGACCATGTGGCTGCTGAGAGGAAAGGCACAATCAGCAGGCGATGATTGGGCACAAACCAGGTGAGACGGCAATGTAACTGTCAGGAAAACAGCAAGGCCactcattatttattgtacaggTTCATACCCCTCAGCACTGTCATCCTTTCCAGTTCCCATGCCTTCCTTACAAGGAGAGCACAGGTCAGAGGTCTTTGAACACACTTGTAACAGCTGTGTAGAGAGAAAACAGGGAGTAGACAGTCTACAGGAAAGATTAAGCTACAGTAAGCAATATTGGGTTAAGGGTTTTGATCTGCAGGCATTTCAACTACCCTATAGAGTCTGTTCCAATGAATATCCTGGTCCTTGTTGGAGGAAAATAAGTGGGCAGTCAGGGACCTGCAGGAAGACTGATAACTTGAACTGTCAAATCTATTTCTGTGTGGCAGAACTCACGAATGTGTTCAAAACATTATCTGCAAACCACTAAATAAATTGTGCTGGAGTCGACAATATTACACTCTCAATGGAAAAAAGGTTTTGGGgagcaggaaaaaaacatttaagaaaaactaaTATAATGCTCTAAAATAGGAGTGTATTTGATAAGCTGTGACTACAGTCTGCAGGCTTTTAAACTGCACTGAACAGTCTATCCTAGTGAACATCCTGGTTCCTTTTTGATCAAATGTGAAGCTCAAAGTCTAGCTGTCAGTTACATAACTAGTAGGGACTCATATCAATcatcatattaaataaatatataatgggTTTCTCAATGtgaaaaaacaatctttaaagactttgtttctattttttgtgACAGGgttggaaaaaatgtgtttcatcgCATTCAGTGAGAGCTTGTAACTGGAAGAACAGTATAAATCCAAGCCCAGCTCTCCCAGGTCCAGCTGTGCATCGCTGTTCCAGTCTTGTAGTGTCAGTACAGGTTGTCTCTGTGCTCGCCTGCCTGGGTGACTGAGTACATTCCCTCTCCATACCACAACTTCCAGACTCTAGTGGTTTAACTCTTAAGTTTGAAATATGTACATTATTCTGtactaaaatgtttgtatattgtAGTCTTCCTTGAGGAATAGTTCTATGCATGCTGATTTTAAAAGATTCATTATCAATGTTTATGGGTTAGTGTTAACCAGTTTCTAAATAAACATCACTGCAAGTTTAAAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004030 True 1674 mRNA 0.42 3 30226633 30229627

Neighbor

gene id symbol gene type direction distance location
AMCG00004029 cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244 coding upstream 23843 30201188 ~ 30202790 (+)
AMCG00004025 NA coding upstream 58761 30157362 ~ 30167872 (+)
AMCG00004026 NA coding upstream 88689 30131236 ~ 30137944 (+)
AMCG00004024 rwdd1,LOC107587776,LOC107704860,LOC106579327 coding upstream 111664 30111086 ~ 30114969 (+)
AMCG00004027 NA coding upstream 128913 30094302 ~ 30097720 (+)
AMCG00004037 NA coding downstream 24743 30254370 ~ 30255135 (+)
AMCG00004028 cmtr1,LOC107682822 coding downstream 28845 30258472 ~ 30270198 (+)
AMCG00004045 NA coding downstream 475513 30705140 ~ 30722327 (+)
AMCG00004050 NA coding downstream 552427 30782054 ~ 30802209 (+)
AMCG00004049 NA coding downstream 575464 30805091 ~ 30807233 (+)
G5198 NA non-coding upstream 80076 30145855 ~ 30146557 (+)
G5191 NA non-coding upstream 103452 30122095 ~ 30123181 (+)
G5185 NA non-coding upstream 117593 30108841 ~ 30109040 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding upstream 527409 29697667 ~ 29699224 (+)
G5129 NA non-coding upstream 541090 29684227 ~ 29685543 (+)
G5248 NA non-coding downstream 45481 30275108 ~ 30276282 (+)
G5271 NA non-coding downstream 315660 30545287 ~ 30545525 (+)
G5272 NA non-coding downstream 323350 30552977 ~ 30553214 (+)
G5291 NA non-coding downstream 510937 30740564 ~ 30740873 (+)
G5297 NA non-coding downstream 548420 30778047 ~ 30778270 (+)
AMCG00004011 ccnc other upstream 685275 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1542652 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1640959 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1760987 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1826892 28379811 ~ 28399741 (+)
G5245 NA other downstream 41583 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 67240 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 658368 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2170778 32400405 ~ 32402383 (+)
G5642 NA other downstream 2900493 33130120 ~ 33131186 (+)

Expression


Co-expression Network