AMCG00004039


Basic Information

Item Value
gene id AMCG00004039
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30296867 ~ 30307175 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004039
GCCTTTCTAGGTTTGGAGGCCCTTGTGTTGACCCAGCAAAAGACCCTCACATTGTCTGCTGCTGGGGGAAAGGCTGTGATATCCTGTGATGTCAACAGTGGCAGCTGGACTATTTCGTGCTACCAGCAAAAGCCTGGAACTGGGCCTGAATTCCTACTAGCTGATTCGAATAGAGCTCCTGGACTGTCGGACAGATTTTCCTACACTGAGGGGTCTTCTGGCAGAAAGGAGTAGCTGCACATCAGCAACGTGCAGAATGAGGATGAGGCTGTATACACTGTGCCTGCGTACAAGTTCAGTCCACAGTGTGAAAGTCTGTATTGTCACCCATCCAAAAACTAACAGCTATCAGACTAGTTAGAGCACCAACTTAAACAtgcttttttaaactgatttaaaatgtcagtatcTTTATGGTGGATTACACATGTCAGTGATCTCTCTAGATGTCTGACACAGTGATGTCCTTTCAAGATTCTTGGATGGATTTTCAAACGTTCTGCATGGGATACTGGTGGATTGGTCTACAAACGAAGACTCATTGAGCTGAATCATTGAGGGTTTTTGTATTGGGCTGAATCACTGTGATATGGACTCTTTGGAGGAGGAACAAAAGTTCACATTTCAAaaaaagGCTCAAAATCGAAGCGGCCGCTCCCCCTCGCCCCCCATACTGACACTACTGCCCACCTCGCAGCAAGAGTTGTCTGAGCAGGGCAGTGCCACGCTGGTGTGCATGGCACAGGGCTTCTACCCTGACTCGCTGTCTGTGTCCTGGGCCAAAGAGGGTGTGGCACGTGCGGATGCAGGGGTGGTGAGCAGCAGTGCCCAGCGCCAACCTGAAGGCACCTTCACCATCAGCAGCTTCCTGAAGCTGTCAGCTGCCCAGTGGCGCTCCAGACATGCCTTCTCCTGCCGGCTCAGCCACTCGGCCCTGAGCGCCCCGCTGACCCGCAGCCGGAGCGCAAATGACTGCAGCTAGATCTAGAGGTCTCACTTACTGACACTGACCCTAACACTGACCAGACACAGACTCAAAGTACCCTGCACCCTACCCTGCCACCATACACCGACCTACACACTGACTCAGAGTACCCTGCACCCCACATTGACCCACATCtgctgactcacacacacatcccacaCACTGACCCCACAGAGCTTCActgttatttgcttaattatgcCAGAGACCCTGGAGAAGCACTAGTCTTCACCAGACTCAGTAGAGCCATATGTGTGTTATAATATAGCCAACTATGTTAAGCTTGAAGATATGCTCTCATATACACTGTTTTATCCCTTTACTGACCATGTGCTTTGTTACTGACTGTGCGCTGTGTTTTTGACCCTGTGTTGCATTACTAGCTAACTGAATCTGTAAGTCTGCAGCCCTCTCTGCCTAGCTGGTGTGCAGGTGGAGACACCCAGTGGTGAAATCTCTCCCTGCACACAGCTGTGGCTGGAGACAGAGACGGGGTACAGTCA
>TU6440
TCACAAATTTCACTGAAATTAATAGTACCCATAGTAGATTCTTCACATTTCTAGTTtattctcattttcatttttgtatattgAGGAATATGAATCAAAACTTAAATGCTTTTTTACTTTACCTTGTTGATAAAATTAACAattccaaaacacattttcgAACACAGTGTTGTACTTAGCAAAATGTTCTCAGTTTCAGACCAATGCCCCTAATTGGCACAGAAGTTCTGAGATCCAGCTATATTTAGCTTGTCGGTGCTAAGAGGGATCTCCCCCTGCCAGAAACAGTTTGAGTGAGACAGCagctggtgagagagagagacattgagAGGAACTGAAGCACTGCACCCAGCCACACACCACTCCACATCCGTTCATTCCCCCCCACACCCAAAAGCTAGATCACTGCACTCCAAACACATGCATCCCTGACCCAGATTTTATAACTTCTTTCCCTGTAACACTTTTAGTATTATTCCCCAGCTGAACAATTCACTCTTATTGATTATAGTAACTCTGGATCACAAGATGAATCCCCACTGAGGGATCACTAATACACGAATCTGTTCTTACGTTCTTAGATGTACTCATTCTAAATGTTCTATTTAACTTCAATCAGAGTCTATTTGATGAGGTGTGGTTTCAGGCTGATTAAAAGACAGGCTAGACAGAGGTATATTGACttatttcaatattcaatattaatgtcatccataaaattaaacaaacacctTCATGTGATCTGTGAATTTaaggtgtgtatatattttttaactgcatTGAAGCGATTATACTGATATTATTCAGTATTTACCTGTTAACTGTAATAAACTGATGAGGTTTTCTCAAATGAGTAACTGGCAAGCATTCAGACCTCCAAAGTGATCAATGACTTCCTTTGGTTGCTCCCTGACAGAAATTAAACATACCAGGGCGACCAAGAGAAATGTACAGTTAATAATACAAGAAAGAAGGCCATACAGCCCACCTCCTTACAACTACTAATACAATTACAACTACAACAACtacttatattttttatttgttataataattgttattttgtacaCATCTCTGACACTGTATATCTGCTCCTTTCTTAGCAATTGGATACTCAACTTCTGGAGTGTACAGTGTGATGCTATATTAATATAGGCAGCTAGTGTCTTTCTATAGTGCTTGAATAGTTTAATAATGTCCTCTGTTATGCACAAATAgttataatacatgtaatacatCTTCGGCAGTTACATTTTATGGGACTGCAGAATCCAGGTAAGAGCCAGCGATTAGATTAAAAGCACAATAGACTATATCATTCTCACAACATGACTTGTAAAGGGCTTTTAGACGTGCTCAACATTACAGAATACTTTACAGAATCCTGCACagaacaaattaatgaatatgtGAATATGTCTGGCTTGTTCATTAGTCCAggctgtgtatttgtgtaatttattccTGGGCGGAGCTGGGCTGTGTTTAAGAATGGTGCCGAAATGCACAGAACCAATCGTGTGCTGACTGACACTGCAgactctcagtctctctctcctctcccaatGACTCGCTCAGCAACCATGGTGCCCAGCACAACTCTCCTCTCAGCTCTGCTGCTGAGTCTCTCTGTCAGCGATGATCCCATTGGCTGGGCACTGAAGACGTCCTTTTCCCAGGCTGTTATGATGCAGACGATGGTCCTGCAGGCAGCGAGGAAGAGGATCCAGGAGAAAAGGAGAGCATCCCTCTGGTCTCCACCAGTGTCGTTTCCCTTTGGCACTTCAGAGCTGTGTGGATGATCAGGAGCACCTGGTTTGGAGGCCCTTGTGTTGACCCAGCAAAAGACCCTCACATTGTCTGCTGCTGGGGGAAAGGCTGTGATATCCTGTGATGTCAACAGTGGCAGCTGGACTATTTCGTGCTACCAGCAAAAGCCTGGAACTGGGCCTGAATTCCTACTAGCTGATTCGAATAGAGCTCCTGGACTGTCGGACAGATTTTCCTACACTGAGGGGTCTTCTGGCAGAAAGGAGTAGCTGCACATCAGCAACGTGCAGAATGAGGATGAGGCTGTATACACTGTGCCTGCGTACAAGTTCAGTCCACAGTGTGAAAGTCTGTATTGTCACCCATCCAAAAACTAACAGCTATCAGACTAGTTAGAGCACCAACTTAAACAtgcttttttaaactgatttaaaatgtcagtatcTTTATGGTGGATTACACATGTCAGTGATCTCTCTAGATGTCTGACACAGTGATGTCCTTTCAAGATTCTTGGATGGATTTTCAAACGTTCTGCATGGGATACTGGTGGATTGGTCTACAAACGAAGACTCATTGAGCTGAATCATTGAGGGTTTTTGTATTGGGCTGAATCACTGTGATATGGACTCTTTGGAGGAGGAACAAAAGTTCACATTTCAAGCGGCCGCTCCCCCTCGCCCCCCATACTGACACTACTGCCCACCTCGCAGCAAGAGTTGTCTGAGCAGGGCAGTGCCACGCTGGTGTGCATGGCACAGGGCTTCTACCCTGACTCGCTGTCTGTGTCCTGGGCCAAAGAGGGTGTGGCACGTGCGGATGCAGGGGTGGTGAGCAGCAGTGCCCAGCGCCAACCTGAAGGCACCTTCACCATCAGCAGCTTCCTGAAGCTGTCAGCTGCCCAGTGGCGCTCCAGACATGCCTTCTCCTGCCGGCTCAGCCACTCGGCCCTGAGCGCCCCGCTGACCCGCAGCCGGAGCGCAAATGACTGCAGCTAGATCTAGAGGTCTCACTTACTGACACTGACCCTAACACTGACCAGACACAGACTCAAAGTACCCTGCACCCTACCCTGCCACCATACACCGACCTACACACTGACTCAGAGTACCCTGCACCCCACATTGACCCACATCtgctgactcacacacacatcccacaCACTGACCCCACAGAGCTTCActgttatttgcttaattatgcCAGAGACCCTGGAGAAGCACTAGTCTTCACCAGACTCAGTAGAGCCATATGTGTGTTATAATATAGCCAACTATGTTAAGCTTGAAGATATGCTCTCATATACACTGTTTTATCCCTTTACTGACCATGTGCTTTGTTACTGACTGTGCGCTGTGTTTTTGACCCTGTGTTGCATTACTAGCTAACTGAATCTGTAAGTCTGCAGCCCTCTCTGCCTAGCTGGTGTGCAGGTGGAGACACCCAGTGGTGAAATCTCTCCCTGCACACAGCTGTGGCTGGAGACAGAGACGGGGTACAGTCAAacttcaataaataaagcattcagAAAACCA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004039 False 1488 mRNA 0.50 3 30303391 30307144
TU6440 True 3305 lncRNA 0.44 4 30296867 30307175

Neighbor

gene id symbol gene type direction distance location
AMCG00004028 cmtr1,LOC107682822 coding upstream 26669 30258472 ~ 30270198 (+)
AMCG00004037 NA coding upstream 41732 30254370 ~ 30255135 (+)
AMCG00004030 NA coding upstream 67240 30226633 ~ 30229627 (+)
AMCG00004029 cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244 coding upstream 94077 30201188 ~ 30202790 (+)
AMCG00004025 NA coding upstream 128995 30157362 ~ 30167872 (+)
AMCG00004045 NA coding downstream 397965 30705140 ~ 30722327 (+)
AMCG00004050 NA coding downstream 474879 30782054 ~ 30802209 (+)
AMCG00004049 NA coding downstream 497916 30805091 ~ 30807233 (+)
AMCG00004051 bpnt1 coding downstream 535545 30842720 ~ 30849036 (+)
AMCG00004059 NA coding downstream 589901 30897076 ~ 30913151 (+)
G5248 NA non-coding upstream 20585 30275108 ~ 30276282 (+)
G5198 NA non-coding upstream 150310 30145855 ~ 30146557 (+)
G5191 NA non-coding upstream 173686 30122095 ~ 30123181 (+)
G5185 NA non-coding upstream 187827 30108841 ~ 30109040 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding upstream 597643 29697667 ~ 29699224 (+)
G5271 NA non-coding downstream 238112 30545287 ~ 30545525 (+)
G5272 NA non-coding downstream 245802 30552977 ~ 30553214 (+)
G5291 NA non-coding downstream 433389 30740564 ~ 30740873 (+)
G5297 NA non-coding downstream 470872 30778047 ~ 30778270 (+)
G5417 NA non-coding downstream 685431 30992606 ~ 30992900 (+)
G5245 NA other upstream 25343 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 755509 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1612886 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1711193 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1831221 28454419 ~ 28465646 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 580820 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2093230 32400405 ~ 32402383 (+)
G5642 NA other downstream 2822945 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 4545688 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 5445275 35752450 ~ 35766180 (+)

Expression


Co-expression Network