AMCG00004040


Basic Information

Item Value
gene id AMCG00004040
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30289035 ~ 30291854 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004040
ttctggatgagctggagtgggcaggtAGCAGTGCCAGACAGGCCAGCCAGGAGTGatttgcagtagtccaggcgggagagaacCGGGACAGAACCAGGGTCTGTACAAACATAGCAGCGAGACAGGATGAGTTGTTATGGTGTTCATCTTCAATACATAGTAGACAGCTTTTTCTTCTGGGTTTTacattgtagtagtagtaagatAAGCAGTAGTGGTTGTAGTTACAACAGTTGCAGCAGCAGTGCCAGCAGTAGTAAGAGATGTAGCGGTAGTGgtaatagcagtagtagtaaataaaaattaaaatgatttaaataattttttataTTAGTCCAGGTTTCCTAGGAACTCATATCTGTACAAACACTTTTGAAAGCTGTTAAGAaacacactgcagccaaGCGCAGACAGTAAAGACTCTCCTTTGGACTCCTGAAGGAAATCTCTTCTCTCACCATGCGGGCCGGGCTTGTTctcctgtgtgtgctgtgtctgtaTCAGAGCTGCACGTCTCAGCTCCTGGGAAGAAAGTGCTATTTATTGGGGCTGTGGAAGAATGAACTGGGCTCCAACTTGTCAGTGACCGCATTGAAAAATGGATTCTTCGAAGGAGTCTACTACACAGCTGTCACCTCCCAGGAGAATTTGGTCAGCAAGGAGTCTCCTGTCTCCGGCTGGGAGCAATGGAACAAGGACACTCTTCAGCCTGTGTTCGGCTTCCTGGTCAAATGGAGCTTTGTGGAGTCAGTGACCTCCTTCGTTGGGCAGTGCTTTATGGAGAAGGATGGCACTGAGCGTCTGGAGACCATGTGGCTGATGAGAGGGcaagcagcaacagcagcagagGACTGGAAGCAGACCTGGGTTggcaaaaatgtgtttcatcGGGTGACTGGAGGACCCTCAGCAAAAAGAACATTGTGAAAGCAGTTAATCTGCATCACTACAGCTCTTCATTCAACGTTCATCAGTGATTCTGCTCATTAAATCAAGATTTGCATGTTTGCATGTCCTagtctttaaataaaaagcatcacAGAAAGCT

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004040 True 1048 mRNA 0.46 5 30289035 30291854

Neighbor

gene id symbol gene type direction distance location
AMCG00004031 NA coding downstream 82101 30204935 ~ 30206934 (-)
AMCG00004036 NA coding downstream 100443 30175559 ~ 30188592 (-)
AMCG00004032 NA coding downstream 132324 30150312 ~ 30156711 (-)
AMCG00004033 NA coding downstream 165018 30116439 ~ 30124017 (-)
AMCG00004035 klhl32,LOC107704937,LOC107587857 coding downstream 211322 30058679 ~ 30077713 (-)
AMCG00004043 NA coding upstream 277201 30569055 ~ 30590089 (-)
AMCG00004042 NA coding upstream 309732 30601586 ~ 30611123 (-)
AMCG00004044 NA coding upstream 340678 30632532 ~ 30639345 (-)
AMCG00004047 LOC107735505 coding upstream 434727 30726581 ~ 30733393 (-)
AMCG00004048 glo1,LOC107679178,LOC102787485,LOC105030941,LOC103022823,LOC107667967,LOC108426138 coding upstream 443042 30734896 ~ 30738621 (-)
G5194 NA non-coding downstream 174024 30112383 ~ 30115011 (-)
G5181 NA non-coding downstream 186381 30102445 ~ 30102654 (-)
G5076 NA non-coding downstream 1019114 29183092 ~ 29269921 (-)
G5032 NA non-coding downstream 1278226 29007691 ~ 29010809 (-)
G5012 NA non-coding downstream 1313768 28974978 ~ 28975267 (-)
G5269 NA non-coding upstream 246082 30537936 ~ 30538437 (-)
G5273 NA non-coding upstream 261123 30552977 ~ 30553218 (-)
G5315 NA non-coding upstream 450925 30742779 ~ 30743167 (-)
G5330 NA non-coding upstream 508909 30800763 ~ 30802575 (-)
G5333 NA non-coding upstream 521441 30813295 ~ 30813583 (-)
AMCG00004041 NA other downstream 12808 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 68900 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 959920 29324741 ~ 29329115 (-)
AMCG00003967 LOC107095448 other downstream 3419457 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 4290407 25965420 ~ 25998628 (-)
AMCG00004052 NA other upstream 521927 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 677825 30969679 ~ 30973496 (-)
G5502 NA other upstream 2017626 32309480 ~ 32309910 (-)
G5540 NA other upstream 2115948 32407802 ~ 32426563 (-)
G5566 NA other upstream 2301773 32593627 ~ 32596407 (-)

Expression


Co-expression Network