AMCG00004041


Basic Information

Item Value
gene id AMCG00004041
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30273806 ~ 30276227 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004041
GCGCCACTCACACGGCATGCTGGGAAACGACAGCGCGGAAGCGGTTGTCCTCCCTCCCGGATTTCTGACTGTTTCTCAACCAGCAGCTGGAGGCAGTGAGTAGCATGGCGAAAGGAAAAAGGGAAACAACCAGTATCGCTACAGAGGAGCGGCGCTCTCTGTGCCAGGACAGTCTGGAGAGAGCCCAGTACAGACAGCGGCGGGAGGACGTCTCCGAGCAGGACAGACAGGCACTGGAGGAAGAGGTGACCATTTTGACTGATAGACTCTCAAAATATGACCAGGAGCTGGCAGTTCTGCGGGGGGAGAACAGAAGGAACATGCTGCTGTCTGTAGCTCTGCTGACCTTCAGCGCACTCATCTACTACGCCCTGCTGTACTGagccctgacctctgacctgctGACCATCTTAATCCACTGTGTACTCTGTGGCCCGGCCCAGCCCCACCAAGCCAAGCGTCCAGACACCAGAGCTGGGCTTCGGAGAGATGCTGCCTAATAGTCCCCCTCCCAGGGCTGTCTGCCTTCAGTTAAAGGACTCCGTCAGTCAGACTTGAATTCCTGTGTCACAGCTCCATGTGCCTTCATTGTGATGTTATTAGTACAGTGGTGAACAGCTCCAGCCCTGGGTCATCTGGATTTGTGGTTCCTCTGCATTTGGCACTGTTAAATTATATGTAGTGGCTGAGGTACCGGTCAGTGCCCAGTGCTTTCCACTGCAGGTCTTTCATACACTCTTCTCCTTAATGATAATATGATAAAACCAATTatccattaataaatacaaggatATGGCTGTCCGAGAGCATTTACACTGTTCATTGGGCATCCAGAGGGGGTAACATTGCTTCACTAAAACTGGGGGCAGTCAGGTGGCCGACACTGTCAGTCCTGCTCATTGCAGGTCTTTGGTACAGCTGTCTGCTTCATTGTTATACAATTAATAACCTAATGAAAGAGATAATGGGCTGGGTGGACCAAACCCCGGCTATGGAATAGGACAGAGCTGTGATGGACATCCCTGGTTCTGGAGGGCCACAGTCCTGCTTGTTGGTTTTTGAAAGACCCCATCTGGAGACAATGtagaatgtattgttttgctaGGAGATTAGGTGTCCCTgaactgtgctgtactgtggcCCCCATGGACCAGGTCTGCCCCCTCTTGTGGTGGATCTGCTTTGTCTGATTCTGATCTGTGTCGTGAGCAGATCCCACATGACCaaagacagtctactgatcctGCACATAtttgtgattaaataaatgttttgtaaaatgacagaataaatatttttcagctGGTTGTTGCTTCTGTCTCGTTCAGTCAATAAGAGCTTCATGGCATCCTCG
>TU6435
CCACTCACACGGCATGCTGGGAAACGACAGCGCGGAAGCGGTTGTCCTCCCTCCCGGATTTCTGACTGTTTCTCAACCAGCAGCTGGAGGCAATTGACCGAGTGGAGGAGCGGCGCTCTCTGTGCCAGGACAGTCTGGAGAGAGCCCAGTACAGACAGCGGCGGGAGGACGTCTCCGAGCAGGACAGACAGGCACTGGAGGAAGAGGTGACCATTTTGACTGATAGACTCTCAAAATATGACCAGGAGCTGGCAGTTCTGCGGGGGGAGAACAGAAGGAACATGCTGCTGTCTGTAGCTCTGCTGACCTTCAGCGCACTCATCTACTACGCCCTGCTGTACTGagccctgacctctgacctgctGACCATCTTAATCCACTGTGTACTCTGTGGCCCGGCCCAGCCCCACCAAGCCAAGCGTCCAGACACCAGAGCTGGGCTTCGGAGAGATGCTGCCTAATAGTCCCCCTCCCAGGGCTGTCTGCCTTCAGTTAAAGGACTCCGTCAGTCAGACTTGAATTCCTGTGTCACAGCTCCATGTGCCTTCATTGTGATGTTATTAGTACAGTGGTGAACAGCTCCAGCCCTGGGTCATCTGGATTTGTGGTTCCTCTGCATTTGGCACTGTTAAATTATATGTAGTGGCTGAGGTACCGGTCAGTGCCCAGTGCTTTCCACTGCAGGTCTTTCATACACTCTTCTCCTTAATGATAATATGATAAAACCAATTatccattaataaatacaaggatATGGCTGTCCGAGAGCATTTACACTGTTCATTGGGCATCCAGAGGGGGTAACATTGCTTCACTAAAACTGGGGGCAGTCAGGTGGCCGACACTGTCAGTCCTGCTCATTGCAGGTCTTTGGTACAGCTGTCTGCTTCATTGTTATACAATTAATAACCTAATGAAAGAGATAATGGGCTGGGTGGACCAAACCCCGGCTATGGAATAGGACAGAGCTGTGATGGACATCCCTGGTTCTGGAGGGCCACAGTCCTGCTTGTTGGTTTTTGAAAGACCCCATCTGGAGACAATGtagaatgtattgttttgctaGGAGATTAGGTGTCCCTgaactgtgctgtactgtggcCCCCATGGACCAGGTCTGCCCCCTCTTGTGGTGGATCTGCTTTGTCTGATTCTGATCTGTGTCGTGAGCAGATCCCACATGACCaaagacagtctactgatcctGCACATAtttgtgattaaataaatgttttgtaaaatgacagaataaatatttttcagctGGTTGTTGCTTCTGTCTCGTTCAGTCAATAAGAGCTTCATGGCATCCTCGCCTCACATGCCGTAGTGAAAGACAAAATTACTGCTGGAAATTTCTTCTCTGATAGCCTTCAGATGATCTCTAATTGAGATAATCTTATGGTACTCCCATTAAATaac

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004041 False 1354 mRNA 0.50 4 30273913 30276227
TU6435 True 1422 lncRNA 0.54 4 30273806 30276224

Neighbor

gene id symbol gene type direction distance location
AMCG00004031 NA coding downstream 66872 30204935 ~ 30206934 (-)
AMCG00004036 NA coding downstream 85214 30175559 ~ 30188592 (-)
AMCG00004032 NA coding downstream 117095 30150312 ~ 30156711 (-)
AMCG00004033 NA coding downstream 149789 30116439 ~ 30124017 (-)
AMCG00004035 klhl32,LOC107704937,LOC107587857 coding downstream 196093 30058679 ~ 30077713 (-)
AMCG00004040 NA coding upstream 12808 30289035 ~ 30291854 (-)
AMCG00004043 NA coding upstream 292828 30569055 ~ 30590089 (-)
AMCG00004042 NA coding upstream 325359 30601586 ~ 30611123 (-)
AMCG00004044 NA coding upstream 356305 30632532 ~ 30639345 (-)
AMCG00004047 LOC107735505 coding upstream 450354 30726581 ~ 30733393 (-)
G5194 NA non-coding downstream 158795 30112383 ~ 30115011 (-)
G5181 NA non-coding downstream 171152 30102445 ~ 30102654 (-)
G5076 NA non-coding downstream 1003885 29183092 ~ 29269921 (-)
G5032 NA non-coding downstream 1262997 29007691 ~ 29010809 (-)
G5012 NA non-coding downstream 1298539 28974978 ~ 28975267 (-)
G5269 NA non-coding upstream 261709 30537936 ~ 30538437 (-)
G5273 NA non-coding upstream 276750 30552977 ~ 30553218 (-)
G5315 NA non-coding upstream 466552 30742779 ~ 30743167 (-)
G5330 NA non-coding upstream 524536 30800763 ~ 30802575 (-)
G5333 NA non-coding upstream 537068 30813295 ~ 30813583 (-)
AMCG00004038 LOC105015767 other downstream 53671 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 944691 29324741 ~ 29329115 (-)
AMCG00003967 LOC107095448 other downstream 3404228 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 4275178 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 4372194 25897934 ~ 25901612 (-)
AMCG00004052 NA other upstream 537554 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 693452 30969679 ~ 30973496 (-)
G5502 NA other upstream 2033253 32309480 ~ 32309910 (-)
G5540 NA other upstream 2131575 32407802 ~ 32426563 (-)
G5566 NA other upstream 2317400 32593627 ~ 32596407 (-)

Expression


Co-expression Network