AMCG00004045


Basic Information

Item Value
gene id AMCG00004045
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30705140 ~ 30722327 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004045
ATGCACCAATCAATAGCATCTCTGGGTCAACCAGATGTCAGCAGCAGGCCCACATCAGCCAGCGCAGAGCCACACCTGGACTCCAACCTCCCTGGACCCCAAGCGACACAGAGAATATTGAGAGGAGAGCAATGGAGATCTGGGTTGGTCTGGGCCAACAGCTCCTCCTCTGAATTCTTGTGGCTACCTGGACAATTGGAGCTTTCTGTTACTGCCATCCAGATAAACCTCCAGCACCtttcagacagacacacatccaACCACCCTATGTTCCTGTTACCTGTGGAATTGCTAAACCCTGCACCAGTTCTATTGttagagtccCAGTGGGCCCCCGCTGGCCTGAAGCTGGAGAAAGGCTGCAGTGGGGGCTGCAATGACTCTTTGATGGGATACCAGCCCTGCCgttccccctcccctcctcacaGCCCCTCCAGCAGCCCCACCCTCCGCCTGACAATCCCCAGACACGCCGAGCCCCGAAGCAGCCCTGGCATAAAAGTTTACTGTAGCAACTTAGAATGgcGGCCCGCTCGTCCACTCCTCCACAGCGGCGGCTGTCCAAGGCTCAGCCCGCGGTCAGTATCCTACGCTGCCTGGGGGAAGGGGAGACCTCCGGCGCAACCACCCCGACACAGCCGGGGAGACAGCAACCGCGTCGAGATCTCATTTTGGACCGAGCTGCCGGCCTCCCCTCTCCGGCGGTTGGTCACGCCCTCCCTCCAGCTGATCGGCCTTGGTGCCCGCGGCCGCTCGTGTCGGCGACGCCCTCGATCCCCCGAGACCCCGTGGACAGTAAGCCGCCTGGCCCCGCCGCCTCCCTGTCCCGCAAACCGCCAGAGAAGCCTCCCAGTACCGCCAGGCCTCTACCCCATCCCCGGTCTCGCCCACCCCGCCCTGCCGACTGGAGCTATGGGGGACACGGGCAGCGAACGCAGCAAACCGCCCAGCCTCCCGCCCCGCTGCCCCTGCGGATTTTGGGGATCCAGCAAGACCATGAACCTTTGTTCCAAGTGTTTTGCTGACATCCAGAAGAAGCAGCCAGATGAGGACTGTGCCCCAGAGCCTGCCCCGAGTCCCAGtggcagccaatcagcagtgtTCTGCGGCGagaccagcagcagcagtagcccCTCCCTCACATCGCCACCGGTCAGCTCCGCCCAGCCGTCACCCAGCGACACAGGCCCCGCCTCCCCCGCAACACAGGAGGGCGTTTCAGTTTCCTGCACAGACACAGCTCATGGCACACTATCAACACCCACAAAACGGCCCTGCGACTCAGCGTTGGGGTCGGAAGATGAAGCGTCGCCGGGGAAGCGGGCGCGACAGGATGATGACGTCACAGCAGAGGAGAGCCGTGGGGGGGCCAAGCAGAGAAGCCGCCGGCGCTGCCACCGCTGCCAGACCAAACTGGAGCTGGTGCAGCAGGAGCTGGGGTCCTGCCGCTGCGgCTATGTGTTCTGCATGCTGCACCGCCTGCCCGAGCAGCACGACTGTCTGTTCGACCACCTGGGCCGTGGCCGCGAGGAGGCCGTGCTGAAGATGGTGAAGCTGGACCGCAAGGTTGGGCGCTCGTGCCAACGCATTGGCGAGGAGTGCTCCTGA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24686 ZFAND3; AN1-type zinc finger protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004045 True 1608 mRNA 0.63 11 30705140 30722327

Neighbor

gene id symbol gene type direction distance location
AMCG00004028 cmtr1,LOC107682822 coding upstream 434942 30258472 ~ 30270198 (+)
AMCG00004037 NA coding upstream 450005 30254370 ~ 30255135 (+)
AMCG00004030 NA coding upstream 475513 30226633 ~ 30229627 (+)
AMCG00004029 cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244 coding upstream 502350 30201188 ~ 30202790 (+)
AMCG00004025 NA coding upstream 537268 30157362 ~ 30167872 (+)
AMCG00004050 NA coding downstream 59727 30782054 ~ 30802209 (+)
AMCG00004049 NA coding downstream 82764 30805091 ~ 30807233 (+)
AMCG00004051 bpnt1 coding downstream 120393 30842720 ~ 30849036 (+)
AMCG00004059 NA coding downstream 174749 30897076 ~ 30913151 (+)
AMCG00004058 NA coding downstream 202461 30924788 ~ 30928491 (+)
G5272 NA non-coding upstream 151926 30552977 ~ 30553214 (+)
G5271 NA non-coding upstream 159615 30545287 ~ 30545525 (+)
G5248 NA non-coding upstream 428858 30275108 ~ 30276282 (+)
G5198 NA non-coding upstream 558583 30145855 ~ 30146557 (+)
G5191 NA non-coding upstream 581959 30122095 ~ 30123181 (+)
G5291 NA non-coding downstream 18237 30740564 ~ 30740873 (+)
G5297 NA non-coding downstream 55720 30778047 ~ 30778270 (+)
G5417 NA non-coding downstream 270279 30992606 ~ 30992900 (+)
G5482 NA non-coding downstream 1064007 31786334 ~ 31786883 (+)
G5490 NA non-coding downstream 1306677 32029004 ~ 32029301 (+)
AMCG00004039 NA other upstream 397965 30296867 ~ 30307175 (+)
G5245 NA other upstream 433616 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 1163782 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 2021159 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 2119466 28568184 ~ 28585674 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 165668 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 1678078 32400405 ~ 32402383 (+)
G5642 NA other downstream 2407793 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 4130536 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 5030123 35752450 ~ 35766180 (+)

Expression


Co-expression Network