AMCG00004049


Basic Information

Item Value
gene id AMCG00004049
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30805091 ~ 30807233 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004049
GGCGTCCCAACCGCACACAGCCAACGAAGCATCATTCAACGAGCACTGGACACCACAGCGGCCCTGCCAAGATGAAATACTGCCTGATCTTCAGTCTGTTGTGCACATGGTCAGTTTTTGCTCTGCCTCCAGATAACAACTGGCCATCAAGGAACAGCAGGTTGAATGGCACCTTTCTCTATGACGAGCTCTGGGACAGCAACATGGACATTGCtaataaaacactggaaacCGATTTCCTGAAAAAAATGGTTGCTGGAACCCTTCCAACAGAGTGCTACATGAAATTCACCCTCCAGGATATCTACTATTTGGTGGGAGTCACAAAAATACTGAAACATCTGAAGAAGCAGAAGGAGCCCCGTGAGGATGTGAAGGATTTCCTGATTGAAAGATATAACAGTTACAACAGATTTGCCCAGGAGACTCTAAAACAGTATAATCTCAAGAATGCAAATGACATCCAACCCTCCAAAGCAACGGCCAGCTACCTGAAGAGTTACAACCAGATAGCCCAGAATATCGCCAAGAAGGATCACATGTACTTCGCAGTCGCCCTGCTGCCCTGTGCCAGACTTTGGCCTTACCTGGCTGAACATCTCAACATCTCATCCAGCAGCCCCTACTACGCGTTCAAGAGGGACAATGAGGGAGGCAGCGCTGAAAAGCACTACAAGAACCTGCTGGAGAAGCACCGCCACAGCATGAAAGAATCCATAGTGAGAACCATCTTCAAACAGCACATGACCTACGAGAATAAATTCTTTGTGTCGGCATGATTTGACTGCTTTTCCGCTCCTCAGCAACTAGTTCTTGACTAGAAGACCTTCCACAAGCAGCCCATTAATCCCAGGGAACTCTGAGGCCGTAATTAGAGTTTATCGCATCAACCCAAGtttcttttatatatagttGAATTTTAGTTATTAGTTACTGTGTTCAAACTTGGTGGTAATGATGTGTTGTGCTCAGAGCTAAAGCCAAACTTTGAGTATGCAGCTGACAAGGCCAACCCAAGCCTTTGTACACACTTCACTGCTttagaaagcattttaataaacattatcCCATCAGTCTATAA

Function

GO: NA

KEGG:

id description
K03707 tenA; thiaminase (transcriptional activator TenA)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004049 True 1081 mRNA 0.45 4 30805091 30807233

Neighbor

gene id symbol gene type direction distance location
AMCG00004050 NA coding upstream 2882 30782054 ~ 30802209 (+)
AMCG00004045 NA coding upstream 82764 30705140 ~ 30722327 (+)
AMCG00004028 cmtr1,LOC107682822 coding upstream 534893 30258472 ~ 30270198 (+)
AMCG00004037 NA coding upstream 549956 30254370 ~ 30255135 (+)
AMCG00004030 NA coding upstream 575464 30226633 ~ 30229627 (+)
AMCG00004051 bpnt1 coding downstream 35487 30842720 ~ 30849036 (+)
AMCG00004059 NA coding downstream 89843 30897076 ~ 30913151 (+)
AMCG00004058 NA coding downstream 117555 30924788 ~ 30928491 (+)
AMCG00004064 NA coding downstream 138239 30945472 ~ 30947477 (+)
AMCG00004057 NA coding downstream 154400 30961633 ~ 30969204 (+)
G5297 NA non-coding upstream 26821 30778047 ~ 30778270 (+)
G5291 NA non-coding upstream 64218 30740564 ~ 30740873 (+)
G5272 NA non-coding upstream 251877 30552977 ~ 30553214 (+)
G5271 NA non-coding upstream 259566 30545287 ~ 30545525 (+)
G5248 NA non-coding upstream 528809 30275108 ~ 30276282 (+)
G5417 NA non-coding downstream 185373 30992606 ~ 30992900 (+)
G5482 NA non-coding downstream 979101 31786334 ~ 31786883 (+)
G5490 NA non-coding downstream 1221771 32029004 ~ 32029301 (+)
G5493 NA non-coding downstream 1384087 32191320 ~ 32191542 (+)
G5499 NA non-coding downstream 1461515 32268748 ~ 32269071 (+)
AMCG00004039 NA other upstream 497916 30296867 ~ 30307175 (+)
G5245 NA other upstream 533567 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 1263733 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 2121110 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 2219417 28568184 ~ 28585674 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 80762 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 1593172 32400405 ~ 32402383 (+)
G5642 NA other downstream 2322887 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 4045630 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 4945217 35752450 ~ 35766180 (+)

Expression


Co-expression Network