AMCG00004050


Basic Information

Item Value
gene id AMCG00004050
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30782054 ~ 30802209 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004050
GTGTCAACATCCTGGTCGTGGGAAAAAAAACGAAACGAGAaaagaaggaggaaaaacagacacccagagagagagagagagaccctgcAGCCGAATCAGCTTTCCCGAGAAAAACTCGAAGGCACAAAGCAGCCCCGCCTGTCCTCGCTGTCCCGGCTCGGTTCGGCTGACCGGCGCGCCATGTCCTGCTGCCTGCTGGAGTTCTGCCGGGTGCAGGAGCTGCGGGCGGTGCGGGACTTTCTGTTCCCCAGCCTGCGACCCGCCGCGGACCCCGCCGCCAACAGCAGGAGCAGCGCAGagaAGGAGGTGAGCTGGGACGATGTGGACTGGGGCTCGTGGGACGACCCCGATGCTGCTGAGAGTGCCCCTGCAGAGGAGGATGGTGCGTCTCAGAGCACCCCCTGGCTGCAGGAGTGCGCGGTGTCGCTGTCGCCCTGCTCTGACTTGATGGTGCTGACCCGTGGACAGAGGGCCGTCTTCCTGTCCGCGAAGTGGCGCACAGCTGACTCTGGGCAGGAGGAGATGACTCTTGCCGTGTCCTGGAGTGGAGCGCTGAGTGCAGAGGAGGGGGAGTCTGTGAGCAGCGTGATCTGCATTCCTCTGGCCAGTCAGAAGAGGAGTTCTACAGGCCGGCCTGACTGGACATGTATAGTGGTAGGCTTCACCTCAGGATACGTGCGCTTCTACACTGAGAGCGGGGTGCTGCTCCTGGCCCAGCTGCTCAATGAAGACACTGTGCTGCAGCTGAAGTGTAGGACCTATGAGATTCCTCGGCACCCCGGGGTCACGGAGCAGCACGAGGAGCTCAGCATCCTGTACCCAGCCGCTCTCGTCACCATCGATGGGTTCAGCCTCTTCCAGTCGCTCAGGGCCTGCAGGAACCAGGTGGCCCGAGcggcagcagcaggcAGTGACAGTGTGCAGCCGCCCCCGCTGGCCTACAAGAAGTGGGGCCTGCAGGACATGGACTCCATTGTGGACCACAGCAGCGTGGGTATAATGACTCTGTGTGCGTTTGACCAGATGAAGAACGCCTCTATCCTAGGGGGCTTCCACGCCACAGTGAAGGGCAGCCCCCCCGCCATGAGCCAGTACATCACCGTAGGAGGGGGACCCTACACTGGCTTCTACTATGCCATTGAGGGTAGCTCTCAGCCCTTGCTGTCCCACGTTGCGTTGGCGGTGGCCAGTAAACTAACATCAGCTCTGTTCAGCGCTGCCagTGGCTGGCTGGGTTGGAAGAACAAGCACGAGGAGGAGCCAGTGCAGAAACAGAAGCCCAAGGTGGAGCCAGCGACCCCACTGGCTGTCAGGTTCGGCCTCCCTGACTCCCGGCGGCACGGCGAGTCCATCTGTCTGTCGCCCTGCAGCACGCTGGCCGGAGTGACGGACGACTTCGGCAGAGTGACCCTGCTGGATGTGGGCAGAGGAGTGGCCATCCGCATGTGGAAAGGGTACCGTGATGCCCAGTTGGGCTGGGTGCAGGTGTGTGAGAGCCGGGGAGAGGCGGAGGCCGGGGGATCGCCTCAATTTCCACGGCGACATGCCCAATTCCTGGTGATCTATGCCCCCCGCCGGGGCATCCTGGAGGTGTGGGGCACCCAGCACGGGCCCCGAGTGGGGGCGTTCACTGTTGGCAAACACTGCAGgctGCTGTACCCAGGTTACAGGTTGATGGGGGTGAACAGTGTGACCAGCCAGGGCTGGCAGCTCCCCACACAGCAGGTGTATCTGCTGGACCCGGCCAGCAGGGCCATTCGCACCATCACCGTGCCCTTCCACCTGGCCCTCAGTGATAAGAAGAGTGAGCGGGCGCGGGACATGCACCTGCAGAAGAGACTCAACACCCTGCTGAGGAGCAGAGACATCCCAcctgAGACCCTGGAGACTGAGGCCAAGAGCATCCTGCTGGACATCAAGCACCCTGCCATCAGGAAACagGCACTGGAGTCCCTGATGTCCAGTAAGAACGCCTCGGTGTCCACTCTGACCGTCGTCACTGGCGCTCTATTGGACAGCCTGCAGGAGCAAGAGGCGGAGGCGGTGGACGAGGCACTCCTGCAGCTGTGCACCTCTCAGCTCAGCCTCCTGCAGCTCTACACCGACATCCAGACACTCAACGCACAGGGCGCTGAACAGGCCAACCCTGACAGCGACACTgtagAGCCAGGAGACGGTGAGATGGACAGTGATCTGGCCCGACTCCGGCCAATCCTGCAGCAGTACACAGAGCTGAACTCCCGGCCCTCCGTGTCGTTTGCTCAGGACCCCAGTGGCCCACTTCCTGTGCGCAGCTTCCTGAGTCAGTTGGAGTGTGAGGGGGGTGTGGTGCGGGCCGTCAGGGGGCCAGACAGTGATTGGACACAGCTGGGCAGCTTCCTGTtctggggctgtgtgtgtggggagagtGCCCCTCACAGGCTGTGTGAGAGACTGCAGGCCGCTGGCTTCAGCCCTCAGCAACTACTGTCTCTGTGCCTCAGTGTGTGGctgtcgagagagagagaggtgctgCGGACGCCGCAGGCTGAGTCTCGGCTGCACAGCCTGCTCACTGCCCTCAGCAACATGACAGgggtggtggaggaggagtgGGATCTGCAGTCTGTCTCCCCCTGGTGGCAGCAGGTGCGCACTGCATGCTCTCAGTCTGAGAGCTCTGGCGCTGCCCTGCTGGCTGGCTTGGTGGGGCACCGTGTGGCCAAGAGCTGCATCAACAGCCTGGCAAAGAAGAAGtTCGAGGCGGAGTGCCTGTCCGACTCGTGGGAGGCCGTGtctctggagctggagcagtgggCCGTGTGTCTCAGGCAGCTGGAGGACACGCTGGCCCTGCAGACGCTGCTGTCCCTGCCCTCGCCCCGCCCTCCCCCAGGGAGCACTTCCACTCGGGTCACCGTCAGGGCGCTGCTGGAGGCCGGCCGAGggGGGGTGGCGGACAGTGTCGCGAAGTGGGTGTTCAGACAGGACCTGCCCCCCGTGCTGCTGAGAGAGATCCTGCAGgcgaggggagagggggagagtcTGAGACAGCCCCCAGCAGAAGAggaaggagggaaggaggagggCGGAGAGCAGAAGCACCAGGAAGGCCAGGAATTCCAGAAAGCTGCAGgGCTGTTGCGCTCCGTGTGTCTGCGGTTCCCCTTCTCTCTGAGTGCTGACCTGCTGTCGGCGCAGTGCTGCTGGGAGTACGTGGTGCAGTGGAACAGAGACCCCGAGgaggGCCGGTTCCTGTCCTGGTCAGTGGAGCACCTTCGAATGATCTCTAACCCTCACACCCAGcacggcattGCGGTGATGATGTGGAGCACTTTCATCGTGAAGCGCTTCTCTGCAGCAGCCTTCCTCATGGAGAAGgtgGGCAAAGCACCAAAGGACCGACTATGCAGGCGGgatgTGGGGATGGGAGACGGGCCGTTGACGTCGTTCCTGGGCTCCTGCACCCAGGTGCTGCAGATCCTGATGGAGGCAGATGCGGGCCGCGACGAAGTGCCCCCCCCAGCGCTGAGTGTGGaggaggtgtgggggggtgtggaGGGCCCGAGCTCAATGCTGGAGCTGGCCCTGGAGCAGCGCTCGGTCCACTACCCCCTGGTCCAGCACCACGCCCTGCTGGCCGCACTGCTGTTCGCTGCCATGACCTTCAACATCCGCCCTGCGCGGCCCCTCGGGCTGTTCGACAGCAAGGGCAAGAATGCCTTCTTTAAAGACCTGACGTCCATCCAGCTGCTGCCCAGCGGAGACACCGACCCCGGACTGGTGTGTCTGAGGCAGGAGtTCCTGCTGAAGGTGATGAGTGGCTGGGTGCAGTCTCTGGTGGAGGTGGGAGAGGAGTATCCCCCCCCCAGTCCCCCTGGTGGGGAGCAGTGGTCCGCGCTAGTGCTAGAGCTGGCCCCCCCGCTGCAGGTGAACTCTGACCTCCTGAGGAGACACCTGGTGTGTGAGCTGTACAGCCAGGGCCTGGACCGCCGTGCAGAGGAGGTGATGTTGGAGGTGGAGGACCGGGAGGTTCTGGGCTCTCAGTTGCTGGTTCTGACAGGTCAGCGCCTATCCTACTCCCTGCTGCACACGCAGACCCGCGCCGGCATGGAGCTGCTGGCCAGACTGCCCCCTGTGCTGTGCACCTGGCTCAAAGCCATGGACCCCGTGGAGCTGCGCTGCCCCTCGGTGCCGCTGTCTCTCACCAGCCGCCTGGTCACCCGGCTGATCGAGATGCTGCCCGAGAGTCACGGCCAGTACAGCCTGGCCCTCCACCTGATGGAGGCTGTGGAGGCCCTGGACACCGAGCCCTGAGAGATGGAGGGCATAGgaatgagaagaagaagaagaagaagaagaagaagaagagaggagTAGAGTGTGACAGTGATGGGaagctgaggagagagagagctggggagACAATTATTGACAGCAGTCCTACATTATATACTCCTGTACCCTGAGGCCAACAGTCTGTGTGCGTTACCAACCCCTGTTCAGCACACACTCTCAACAGTATACTGTcccacacactgtacacagCACACACTCTCAACAGTATACTGTCCCACACACTGTGTACAGCACACA

Function

GO: NA

KEGG:

id description
K19937 RAB3GAP2; Rab3 GTPase-activating protein non-catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004050 True 4575 mRNA 0.62 36 30782054 30802209

Neighbor

gene id symbol gene type direction distance location
AMCG00004045 NA coding upstream 59727 30705140 ~ 30722327 (+)
AMCG00004028 cmtr1,LOC107682822 coding upstream 511856 30258472 ~ 30270198 (+)
AMCG00004037 NA coding upstream 526919 30254370 ~ 30255135 (+)
AMCG00004030 NA coding upstream 552427 30226633 ~ 30229627 (+)
AMCG00004029 cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244 coding upstream 579264 30201188 ~ 30202790 (+)
AMCG00004049 NA coding downstream 2882 30805091 ~ 30807233 (+)
AMCG00004051 bpnt1 coding downstream 40511 30842720 ~ 30849036 (+)
AMCG00004059 NA coding downstream 94867 30897076 ~ 30913151 (+)
AMCG00004058 NA coding downstream 122579 30924788 ~ 30928491 (+)
AMCG00004064 NA coding downstream 143263 30945472 ~ 30947477 (+)
G5297 NA non-coding upstream 3784 30778047 ~ 30778270 (+)
G5291 NA non-coding upstream 41181 30740564 ~ 30740873 (+)
G5272 NA non-coding upstream 228840 30552977 ~ 30553214 (+)
G5271 NA non-coding upstream 236529 30545287 ~ 30545525 (+)
G5248 NA non-coding upstream 505772 30275108 ~ 30276282 (+)
G5417 NA non-coding downstream 190397 30992606 ~ 30992900 (+)
G5482 NA non-coding downstream 984125 31786334 ~ 31786883 (+)
G5490 NA non-coding downstream 1226795 32029004 ~ 32029301 (+)
G5493 NA non-coding downstream 1389111 32191320 ~ 32191542 (+)
G5499 NA non-coding downstream 1466539 32268748 ~ 32269071 (+)
AMCG00004039 NA other upstream 474879 30296867 ~ 30307175 (+)
G5245 NA other upstream 510530 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 1240696 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 2098073 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 2196380 28568184 ~ 28585674 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 85786 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 1598196 32400405 ~ 32402383 (+)
G5642 NA other downstream 2327911 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 4050654 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 4950241 35752450 ~ 35766180 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location