AMCG00004053


Basic Information

Item Value
gene id AMCG00004053
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30860092 ~ 30882508 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004053
CAGGTCCCTCTGCTGCTTATAGACAGACGGACGGTCACACACTCAGACAGACATGGACACAGCTCGCTTTGTGACACTAGCGGCTCTGGCAGTGACGCTGCTGGGAGATCTGCCTGCCCTCACAGGGTCCCACATACAGTCAGAGCTCCCCCTGGTGTCAGGCCTGGGGCCTGCAGTGTCAGAGGGAGGAGCAGACAGGacagagggacagctGCTCCTGCCCTGCTCTGCCCTCCCTGCCCAGCCTCCCCCTTCCTCAGCCCCCCATCCTCCCTGGAGACCAGCaagtgcagacagacaggagTGCAGTGGCCACAGTTATAGGAAGGTTATCAGagctcCTGTCCCTGTTTAACCCTGAACTGTCCACACTGCAGCTTGaccacacacaccagcacagGTCCCTGTCAGAACAGGCTGAGGccctggctctctctctcaggagcaGTGAGGCCAGGCCCTCAGACCGAGGCTGGAGACTGATCCTGCTGTTCAGTGGAGAGCAGCCCTGTCCCTGTGACACCCAGGTCAGCCCAGCTGTGCAGAGTGCAGTGGAGCAGGTAGAGAGCGCTGTACAGGTGCTGCACAGACAGGTCCCCCGGGCGCTGGTCAGCGTGGTGCCATGGGTGGGACAGACAGGACAGGCTCTGGGGGGCAGGCGCTGTGGTCAGTGTGAAGGAGCTCTCAGTGCCGCCGGGGTCCGACTGACGGATGCTGTTCTCACCCGAGCTCTGGAGgaGGCTCTGGAGCAGCAGCTGGTGGAGAAGCAGTGGTACAACGACAGAGAGGACTTCACTGTGCACATCCAGGCCCTGCCCACTGGCACTGGCACGGACTACAAGGTGggagggagggagacccCTGCTGGACACGATGCCCTCCGCCTGGCCCTGCAGCTGTGGACTGGCCTGCTGCAGCCCATGGGAGAGCAGCCTGCCATGGAGGACAATGACATCAGCCCTGTTGTGTGCCCCACCAAGgacTGTCCGTTCCTCCGCACTCACAGGAACTCTTTTCCCAGCTCTCCCCAGCCCAGATCTCGGACGCTGCACAAGAGCAACGCCACCCCACCGACtcccacacacactcccacttCCACACAGAATCACACTACCACACATAGTTCCACTCCCACAGTGCCCAAACCCCTTGACCCGGTGTTGGGTAGTGAGCTGCATTGCACTGATCACAGCCCCTCGGACACCCCCCCCACTTCAGtccacTATCTCAGGCCAGGGGACATCAAAGTGGTAGCAGCTATAGGAGACTCTTTGACGgcaGGAAATGGTGTTGGTGCCAACCCCAACAACATCCTGGATGTCCTGAAGCAGTACAGGGGGCTTTCCTGGAGtattGGAGGAGATCAGACCCTGAACACAGTCACCACCCTGCCCAATATTCTTGACTGTCTTTTaattgtctgtctctctgacaGGGACTTACCGGGCCAAGTGCACACCCTGGTGAAGTTGATGAAGCAGGACCAGCGAGTGGATTTCCAGAGGGACTGGAAGTTGGTGACAGTGTTCATCGGAGGCAATGACCTGTGTGACTACTGCACTGACAGTATCTATTTCTCACCCCGGAATTTCATGATCCGAATCCAGCAGGCTCTGGACATCCTACACAAAGAGgtGCCGCGGGTGTTTGTGAACCTGGTCGAGCCGATGCACATTACCCCCCTGCGCAGATTGCACCAGGACCGCAGCCTGGGCTGCCCCACCCTGATTGTCAATATATTGTGTCGCTGTGTGGTGAAGCCTAAGGAGGGGTCCAGGGAGCTCCAGACATTGAATGACCTGAACAGAGCCTATCAGCGAGCAGTTCTTGAGCTGGTGGACTCCGGGCGATACGACACGCGTGATGACTTCACTGTGGTGGTGCAGCCTTTCTTCAGGGAGGTGGTGCTCCCCCTGCTGCAGCACGCACCCTTCCTGCGAACCTATAGGAACAGTAACTACTCCTACCCTGACCCCGACCCCACCGAGCCACCAATCAAGGACTGGGGCAGTGACCTGACTTGTAAGAACCGGGCTCCCTCTGATTCCCCACCCACCtcagCCCACAGGCTGCGGCCAGGAGATGTGAGAGTGGTGGCTGCTCTGGGAGACTCTCTGTCTtgtttgtgtctttgcaGCATCGGGGGGGATAAGAAGCTGGAGACAGTCACCACATTGCCCAGTGAAGATATTCCAGAACAAGTGGAGAATCTGATCCAGGCCCTGAAAGATAGCCCGgagGTGGATTTTGACAATGACTGGAAGATGGTGACCCTGTTCATTGGGGGAAATGACCTGTGTCAGTACTGTCTGGACAGGGACACCCTGTCGGTGCAGAACTACAGCCAGCACCTGAGGGACAGCCTGGATCTACTCTACAGAGAGatggagacagagaggcTGGTGTCGGGGGGGCGCTATGATGGCAGGGAGGACTTCACAGTGGTCATTCAGCCCTACTTCAGGAACTCCATCATCCCACTGGCAGCGgATGGGAAGCCTGACCTGAGCTTCTTCTCGGTTGACTGTTTCCACTTCAGTGAGCGCGGACATGCCGAGATGGCCATTGCCTTGTGGAACAACATGgaccagCCCTATTTCTTCACGAGGAACAACAGCTTTCCATGGCGCACCCCCTCCACCCTCCCTGCAATCAACACGGTGCCTCTGTGGGCTGCCATGGTTATCCTGGCAGCGGGGCTACTGATTGGCTGCTTGACCACGTGGCTCCTCCTCTCCCGCAAAGCCCAGCAGAGAGTgcgggagaaggagagagggctGGAGCTGCCCAGCACAGCACTGTGACTGCATCCCATAATAACAACATCACCCCGTCCTCCTGCTGCAGCACACTGTGGCCACCCCCACCTGGGAGGCCTCAAGGCTAATCAATAGAGAACCCAGGGGAAATTACTATAGCAGCTTACTGTAGAGTGTAGTTTTACCATTGACGTATTTGCTACAAAGTGTGGTGCAGTAACATCACAGCCAGTATGAACATACATGCAGCTGTGCACCACGGTCAGTTCAGTTTGCAGCTCTGTGTGTACAAACTAGTCATGTGCTTACTAAAGTGTCTTTACTGTAAAATCGACAATAGGcaaaaagtacatattttctgcattttactgcattttgttGGCAGTTCTTAAAAGTTCAGAAAAATGTTCATTATAGCTTTCCACTGACATTACAAATCAGTACATTTGCTCTATAGTCTAGAGTCTACAAAGtccttcacatttattttttgcaggaCCTGTAGTTGTGACTCGCTGTTCGTTCTCCTGTGACATTCCTCAGAGTCGGCCTCTTATCTCTGAACTGAATTACTCTCTTACCCCCTACAATAGCACAGTATACAGGGTACCTGTAGGGAAAAGGACATCAGTAGTCCAGCCTGTTAGAGAGAGTATAGTTCCCAGGAGTTTCATTCTTCAATGTGCAAAGATGTCTCCTGTTAATTCCTGTCTGTACAGATTGCTGTTTCTTTATctgtgatgtattttgtttcctgataaatatgtttgttaaataaatgaaataaaataaaataaaataaaataaaataaagtacaatcaGTCAGTGAGGCAAAA

Function

GO: NA

KEGG:

id description
K14621 PLB1, PLB; phospholipase B1, membrane-associated

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004053 True 3596 mRNA 0.54 35 30860092 30882508

Neighbor

gene id symbol gene type direction distance location
AMCG00004054 ppp1cb,LOC104966956,LOC107583611 coding downstream 4033 30850875 ~ 30856059 (-)
AMCG00004055 NA coding downstream 31587 30827123 ~ 30828505 (-)
AMCG00004046 NA coding downstream 78326 30779865 ~ 30781766 (-)
AMCG00004048 glo1,LOC107679178,LOC102787485,LOC105030941,LOC103022823,LOC107667967,LOC108426138 coding downstream 121471 30734896 ~ 30738621 (-)
AMCG00004047 LOC107735505 coding downstream 126699 30726581 ~ 30733393 (-)
AMCG00004061 slc30a10,ypel5,LOC107601641,LOC107672346,LOC107683860,LOC107568027 coding upstream 49795 30932303 ~ 30937309 (-)
AMCG00004062 NA coding upstream 57648 30940156 ~ 30945990 (-)
AMCG00004063 eprs,LOC107679779,LOC107732550,LOC107662594 coding upstream 68347 30950855 ~ 30955886 (-)
AMCG00004068 NA coding upstream 130637 31013145 ~ 31022165 (-)
AMCG00004069 NA coding upstream 184803 31067311 ~ 31075673 (-)
G5387 NA non-coding downstream 13791 30843678 ~ 30846301 (-)
G5333 NA non-coding downstream 46509 30813295 ~ 30813583 (-)
G5330 NA non-coding downstream 57517 30800763 ~ 30802575 (-)
G5315 NA non-coding downstream 116925 30742779 ~ 30743167 (-)
G5273 NA non-coding downstream 306874 30552977 ~ 30553218 (-)
G5393 NA non-coding upstream 7678 30890186 ~ 30959114 (-)
G5432 NA non-coding upstream 106364 30988872 ~ 30990100 (-)
G5463 LOC108443926,LOC105894840 non-coding upstream 487492 31370000 ~ 31371409 (-)
G5465 NA non-coding upstream 504076 31386584 ~ 31387033 (-)
G5467 NA non-coding upstream 651439 31533947 ~ 31534379 (-)
AMCG00004041 NA other downstream 583865 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 639957 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 1530977 29324741 ~ 29329115 (-)
AMCG00003967 LOC107095448 other downstream 3990514 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 4861464 25965420 ~ 25998628 (-)
AMCG00004060 NA other upstream 87171 30969679 ~ 30973496 (-)
G5502 NA other upstream 1426972 32309480 ~ 32309910 (-)
G5540 NA other upstream 1525294 32407802 ~ 32426563 (-)
G5566 NA other upstream 1711119 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 2683578 33566086 ~ 33567325 (-)

Expression


Co-expression Network