AMCG00004056 (ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471)


Basic Information

Item Value
gene id AMCG00004056
gene name ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30887995 ~ 30894827 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004056
ATAGAAGCTGCAGGAACAGCTGAGCAGCAGacaacaacacagagagagagagagagagagagagagagagagagagagagagagagagagagagagacggaaaacaaaaggaaaagaagagagACTAACTGAGTGAGAGCGCAGCGGCTCATCGACCTACGGTGATTCGTCGCAGAGTCGAGGCAGGCCGGCGATTGACCGACTGACACGCACACGGAGACAGGCCGAGAGGAGTGTCCCAGAGTGGAGCTGAGCGCGATGGGGCGGATCTTCCTGGACCACATCGGCGGCACGCGTCTATTCTCCTGCGCCAACTGCGACACCATCCTGACCAACCGCTCCGAGCTCATCTCCACACGCTTCACCGGCGCCACCGGCCGCGCCTTCCTCTTCAACAAGGTGGTGAACCTGCAGTACAGCGAGGTGCAGGACCGCGTGATGCTGACGGGGAGACACATGGTGCGGGACGTCAGCTGCAAGAACTGCAACAGCAAGCTGGGCTGGATCTACGAGTTCGCCACGGAGGACAGCCAGCGCTACAAGGAGGGTCGTGTGATCCTGGAGCGGGCGCTTGTGCGCGAGAGCGAGGGCTTCGAGGAGCACGTGCCCTCGGACAACTCCTGAGCGCTGCCGGGCCGACGTGCGGTCGAGGCCGTGCTTCTCCATTTTGCAAAACAACTCTGCCCCTACGCCCCACCCCCACACCGCACaaaccacaacacacactcGCAGCTCAAGTGCCCCATTGAGAGCCTCCAACTCAGCTAACACCCCTGTTGACACCGCCTGCCCCCCAGCGCGTTCACTGACCAGCATTTCCTTGCGCCTCACCCCCACCATCTAGAGAGTCCGACTGACGCCGCTCTTCCTGACTCGCACGGtctcaccccccacccacacgTTAACACACAGTTCGCCAAAACccccacacactgcacacaccgCACACTTGTATGCAACAGAGATCAATTACATAACACATTTACACGagcacaaacacagaacacctgaaaacccacacacacccgcacacacacaccccgtgGCCATTCTAGAGCCCAGAGCCTGCAGCCTGCTAGTATCACAGCCCCTGAGGGACAGGGTAGGACGACTGTAGAGAGAGTAGGAGTGAGAGTGAGAAACGGGTGGTGGTGCAGATAGAGGCAGTTCAAGTGTGTGTCAAACCAGTTAAGAGTTTTGTGTGGCAGAGTGGGGTTTTAATAATGGAGAGTTGGTTCTTTTTATTTCcgttcttttatttttcccttgtctctgtctctcggtGTCCTAGACTGAGGAATGAGTgagtgctgtgctgctgtgatttCCTGCAGCGGGTGGGttactgtgtttctgtgctgggGTTTGCATGCACAAGTACCACATTGGCGAAGTCGTTTGAGATCTTAACAGACATGGTGTTGTAGTTCCAGACCGTCACCGGTACGGACTCTGCCACAGGTACATTGCTCTGCATGCGCCCACTGTGGTCTGTGTCGTCTCCTCCCGCTGTCCCTGTAGTTTTGCGGTGTGAGAAGCTTGTGTGTGCAGAAAGCGTTAGTGTAACATTTCCAAGGAACCGGCACAAAGGACAACCAGGGTCCGGCTAAGGAAGGATGGAGGGGTTAGTTTagttcatcattattattattgttatttcctgtttgttttttgtattaatctcAAATTTGAACATCCCTTTAATGTGAAGGCATTTAAAGAGAAACTGTTCattgaaatttaattttagCAGGACTGACTGATTAACTGACTGACATTTGCTGAAAGTCAGACCTGGTGAGTGAGTCGGTGTGATCTCTCTGTGACGGGTGGGAGGGTGTGAGAGTGTGAAGGCTGCCGTGTGCTGTGAGGGTGTGTATTCAGCTTCAAACCTCTCTCTCTTGGTGCACAGGCTGCAGACTCTGGGAAGCCCTGTGGCCCTCCTCCCTTTGACCAGCCCTGTCCCCTTGTGCCATTACCAGGTTTTTGAAGATTTAtgatgggggtgggggcggtCCTGTTTATTCCTGCAGGACACAGAACCAGTCCCTGCCCCCCTCAACCCATCACCTGTCCGATCACAACTCACCTTGCCTCTGCAATTGGCAGATTAGAAAAAGTGATTGTCATAATCTGGTGGTAATagtgtgattattattactattattattgctgtttttctttctttaatttgaggaaAGTGAGAATGTTTAGTCTTTGCTGAGTTTTTCTGTAGTGGCAGTTTATCAATAAAGTGATTTGTCTTGAGTC
>TU6554
GCCGGGGGCGGGGCCTCAGCGCGGAGCGGATGTTGTTATAGAAGCTGCAGGAACAGCTGAGCAGCAGacaacaacacagagagagagagagagagagagagagagagagagagagagagagagagagagagagacggaaaacaaaaggaaaagaagagagACTAACTGAGTGAGAGCGCAGCGGCTCATCGACCTACGGTGATTCGTCGCAGAGTCGAGGCAGGCCGGCGATTGACCGACTGACACGCACACGGAGACAGGCCGAGAGGAGTGTCCCAGAGTGGAGCTGAGCGCGATGGGGCGGATCTTCCTGGACCACATCGGCGGCACGCGTCTATTCTCCTGCGCCAACTGCGACACCATCCTGACCAACCGCTCCGAGCTCATCTCCACACGCTTCACCGGCGCCACCGGCCGCGCCTTCCTCTTCAACAAGGTGGTGAACCTGCAGTACAGCGAGGTGCAGGACCGCGTGATGCTGACGGGGAGACACATGGTGCGGGACGTCAGCTGCAAGAACTGCAACAGCAAGCTGGGCTGGATCTACGAGTTCGCCACGGAGGACAGCCAGCGCTACAAGGAGGGTCGTGTGATCCTGGAGCGGGCGCTTGTGCGCGAGAGCGAGGGCTTCGAGGAGCACGTGCCCTCGGACAACTCCTGAGCGCTGCCGGGCCGACGTGCGGTCGAGGCCGTGCTTCTCCATTTTGCAAAACAACTCTGCCCCTACGCCCCACCCCCACACCGCACaaaccacaacacacactcGCAGCTCAAGTGCCCCATTGAGAGCCTCCAACTCAGCTAACACCCCTGTTGACACCGCCTGCCCCCCAGCGCGTTCACTGACCAGCATTTCCTTGCGCCTCACCCCCACCATCTAGAGAGTCCGACTGACGCCGCTCTTCCTGACTCGCACGGtctcaccccccacccacacgTTAACACACAGTTCGCCAAAACccccacacactgcacacaccgCACACTTGTATGCAACAGAGATCAATTACATAACACATTTACACGagcacaaacacagaacacctgaaaacccacacacacccgcacacacacaccccgtgGCCATTCTAGAGCCCAGAGCCTGCAGCCTGCTAGTATCACAGCCCCTGAGGGACAGGGTAGGACGACTGTAGAGAGAGTAGGAGTGAGAGTGAGAAACGGGTGGTGGTGCAGATAGAGGCAGTTCAAGTGTGTGTCAAACCAGTTAAGAGTTTTGTGTGGCAGAGTGGGGTTTTAATAATGGAGAGTTGGTTCTTTTTATTTCcgttcttttatttttcccttgtctctgtctctcggtGTCCTAGACTGAGGAATGAGTgagtgctgtgctgctgtgatttCCTGCAGCGGGTGGGttactgtgtttctgtgctgggGTTTGCATGCACAAGTACCACATTGGCGAAGTCGTTTGAGATCTTAACAGACATGGTGTTGTAGTTCCAGACCGTCACCGGTACGGACTCTGCCACAGGTACATTGCTCTGCATGCGCCCACTGTGGTCTGTGTCGTCTCCTCCCGCTGTCCCTGTAGTTTTGCGGTGTGAGAAGCTTGTGTGTGCAGAAAGCGTTAGTGTAACATTTCCAAGGAACCGGCACAAAGGACAACCAGGGTCCGGCTAAGGAAGGATGGAGGGGTTAGTTTagttcatcattattattattgttatttcctgtttgttttttgtattaatctcAAATTTGAACATCCCTTTAATGTGAAGGCATTTAAAGAGAAACTGTTCattgaaatttaattttagCAGGACTGACTGATTAACTGACTGACATTTGCTGAAAGTCAGACCTGGTGAGTGAGTCGGTGTGATCTCTCTGTGACGGGTGGGAGGGTGTGAGAGTGTGAAGGCTGCCGTGTGCTGTGAGGGTGTGTATTCAGCTTCAAACCTCTCTCTCTTGGTGCACAGGCTGCAGACTCTGGGAAGCCCTGTGGCCCTCCTCCCTTTGACCAGCCCTGTCCCCTTGTGCCATTACCAGGTTTTTGAAGATTTAtgatgggggtgggggcggtCCTGTTTATTCCTGCAGGACACAGAACCAGTCCCTGCCCCCCTCAACCCATCACCTGTCCGATCACAACTCACCTTGCCTCTGCAATTGGCAGATTAGAAAAAGTGATTGTCATAATCTGGTGGTAATagtgtgattattattactattattattgctgtttttctttctttaatttgaggaaAGTGAGAATGTTTAGTCTTTGCTGAGTTTTTCTGTAGTGGCAGTTTATCAATAAAGTGATTTGTCTTGAGTCCTt

Function

symbol description
ypel5 Predicted to enable metal ion binding activity. Predicted to be part of ubiquitin ligase complex. Orthologous to human YPEL5 (yippee like 5).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein yippee-like 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004056 False 2271 mRNA 0.52 3 30888032 30894824
TU6554 True 2311 TUCP 0.60 3 30887995 30894827

Neighbor

gene id symbol gene type direction distance location
AMCG00004051 bpnt1 coding upstream 38959 30842720 ~ 30849036 (+)
AMCG00004049 NA coding upstream 80762 30805091 ~ 30807233 (+)
AMCG00004050 NA coding upstream 85786 30782054 ~ 30802209 (+)
AMCG00004045 NA coding upstream 165668 30705140 ~ 30722327 (+)
AMCG00004028 cmtr1,LOC107682822 coding upstream 617797 30258472 ~ 30270198 (+)
AMCG00004059 NA coding downstream 2249 30897076 ~ 30913151 (+)
AMCG00004058 NA coding downstream 29961 30924788 ~ 30928491 (+)
AMCG00004064 NA coding downstream 50645 30945472 ~ 30947477 (+)
AMCG00004057 NA coding downstream 66806 30961633 ~ 30969204 (+)
AMCG00004065 NA coding downstream 80149 30974976 ~ 30990100 (+)
G5297 NA non-coding upstream 109725 30778047 ~ 30778270 (+)
G5291 NA non-coding upstream 147122 30740564 ~ 30740873 (+)
G5272 NA non-coding upstream 334781 30552977 ~ 30553214 (+)
G5271 NA non-coding upstream 342470 30545287 ~ 30545525 (+)
G5248 NA non-coding upstream 611713 30275108 ~ 30276282 (+)
G5417 NA non-coding downstream 97779 30992606 ~ 30992900 (+)
G5482 NA non-coding downstream 891507 31786334 ~ 31786883 (+)
G5490 NA non-coding downstream 1134177 32029004 ~ 32029301 (+)
G5493 NA non-coding downstream 1296493 32191320 ~ 32191542 (+)
G5499 NA non-coding downstream 1373921 32268748 ~ 32269071 (+)
AMCG00004039 NA other upstream 580820 30296867 ~ 30307175 (+)
G5245 NA other upstream 616471 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 1346637 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 2204014 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 2302321 28568184 ~ 28585674 (+)
AMCG00004079 NA other downstream 1505578 32400405 ~ 32402383 (+)
G5642 NA other downstream 2235293 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 3958036 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 4857623 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 5132452 36027279 ~ 36045282 (+)

Expression


Co-expression Network