AMCG00004060


Basic Information

Item Value
gene id AMCG00004060
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30969679 ~ 30973496 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004060
CGTCTTTCCCACGCTGCTCCAGCATGGCGACTGTCAGAGAGGAAGGTGTGTGTAAGTGACTGATCCAGGCAGGGGGCGACCGCCGAGGGACTAAACCCGGAGCCAACGCAGGACTGCTCTCCCTGCAGCCGGCCTGGTATGATCTGATCACCTGTCAAAACCGACGGAGGGCAGCGCGACTTTCTTCAACACTGCTTTGTACATGGTGCGCATCGTCCGTAGTAGCAGTGCGGATACAACCGCACACTGAAGGAAAACCCGACCCGCAGGAAAAAGGTTCCTACCCGTAGGTGTTGTTGTGTTTAGGAGGAAGAAAAGAGCTGGACTCGCATGGGTAGATGTGGTGTGTGTCTGCCGGGTGCATCAGTCCCATGTGGGAACCGTGTCCTTGGACTCCACTAACGGAATATGCTAGTAGTCTGTACAGTAGCTGCTGCGTCTGTTTGTAAAACGTTAGTGATATTAAGTGAGgtctttaaacaaaatgatcaaaagtaatgcaaatacattatacaaaataagttGCACACAGTTAATATATGCTCATGGGGTGGTGGGAGTTCTGTGGTGTGTAATTACTACAAAACTATCTGaatattgtattactgcacacagtttacatttatatatagactTTTTGAAGTTGTGCTGTGCAGATGTGGGGGGGTGCGTGCAGGTTCTGGCAAGCGGGCCAGCTGTGTGCCCGGGCGCGGGGGGCGTGGAGCATACTGGGGAGAAGGGGGTGTgaggtggagggagagggacaggtATTCAACCGCCCAGGAGGGGGTCACAGACTCTTTGGATTAGCACCCCCTGGGGAGGGTGAAGAGAGTAGGGGGAGCCGAGTGAGGAGTGAGGATGAGAGTCCAGACACCCAGGCTGGCTCTTCCCCACCTCAACCACTGCCCCGGACTGGGGTGCCACCCCTCGGCTTGAGCCTGAGGGCCAGACATCGATCCCTGTCACCCCTGGAGAGACTCAGCCGCCTGCTGCCCCTGGACTCCCTGACACAAGAGGTGAGGgagctgagagagagcgagggaggggaGACGCAGGGGtatggagagagacagatgcaGGGAGAGAGACTGCCTGAAGGGCCCACATGGGGAGATTGCAGCTCTATGGATGGGGAGTATGGAGACTCTGGGTGTTCCAAGAGCCAAGTCCCAGGAACCCCAAGCAACACCCCCATCCCCATTATCCCCAGGGAGCTGCCCCTGCACCCAGGGGAGCTGGTGCTGGCGGAGTATCGGCGTAAGGGACAGCTGGAGTTCCGGAAGATGTTTGAGCTGAACGAGGGGGGGCAGCTGCACAGTAACTGGGGGTCCCTGGCCCACAGCGCGGTCCTGGGGCACCCCTCGGGCACCTTGGCCCTCACCTCCACAGGCACTCCCCTGCTGCTGCGCCGGCCCAGCCTGGAGGAATATGCCCTGCTGATGAAGAGGGGCCCCACCATCGCCTACCCCAAGGATGTCAGtgcgatgatgatgatgatggatgTGTGTGAGAGGGACAGTGTGCTGGAGTCGGGGTCAGGGTCCGGGGCCATGTCTCTCTTCCTGTCCCGCGCAGTGGGCTCTGGGGGTCGGGTACTCAGTGTGGAGCTGCGGAAGGACCACCACAGGAGGGCACTCCTGAACTACCAGCGCTGGCGAAAGTCTTGGGGCATGGCCCGTGATGGAGCCTGGCCTGACAATGTGGAGTTTGTCAACAAAGACTTGAGCAGTGCTGCTGACCTGCTGGAGGGGCGGAGCTTCCATTCAGTGGCTCTGGACATGCTGAACCCCCAGGTAGTGCTGCCCACTGTGTTCCCTCACCTGTGGAATGGGGGTGTCTGTGCAGTCTACCTGGCCAATATCACGCAGGTGGTGGACCTGCTGGAGGGTGTACGCAATGCCGGTCTGCCCCTGCTGTGTGAGCGGGTCATTGAGGTCACGCACAGGGACTGGGTGGTGGCCCCAGCGATCCGGAAGGATGGCAGCCGGGCCCCCAGATTCCTGTCCACTGGGGTCAAGGGTCAGCATGacgaggagaaggaggaggagggggagccATCATGTGACCAAGAAGGAGAGACTTTGGGACGACGTGACTCAAGGTCGTTAGAGACAGTGCCCTACATCGCCCGGCCCCATCACGAACAGGGCAGCCACACAgCATTCCTGGTGAAGCTGAGGAAGGTGGTGCCAGTGCCACACCACTCCAGGTCGGGGAGGATGGAGGGTCCGGGCGCCGACACAGAAGACCCCAGCAGCCACATTGGCCAGCCGTGACAGTCACAAGCAAGCCTGTCTTTCCtggaaatgttgtttttgttgttgctgctgttgtgtctaattaaatattttattaaactgctCTGTTT
>TU6645
TTTCCCACGCTGCTCCAGCATGGCGACTGTCAGAGAGGAAGGTGTGTGTAAGTGACTGATCCAGGCAGGGGGCGACCGCCGAGGGACTAAACCCGGAGCCAACGCAGGACTGCTCTCCCTGCAGCCGGCCTGGTATGATCTGATCACCTGTCAAAACCGACGGAGGGCAGCGCGACTTTCTTCAACACTGCTTTGTACATGGTGCGCATCGTCCGTAGTAGCAGTGCGGATACAACCGCACACTGAAGGAAAACCCGACCCGCAGGAAAAAGGTTCCTACCCGTAGGTGTTGTTGTGTTTAGGAGGAAGAAAAGAGCTGGACTCGCATGGGTAGATGTGGTGTGTGTCTGCCGGGTGCATCAGTCCCATGTGGGAACCGTGTCCTTGGACTCCACTAACGGAATATGCTAGTAGTCTGTACAGTAGCTGCTGCGTCTGTTTGTAAAACGTTAGTGATATTAAGTGAGgtctttaaacaaaatgatcaaaagtaatgcaaatacattatacaaaataagttGCACACAGTTAATATATGCTCATGGGGTGGTGGGAGTTCTGTGGTGTGTAATTACTACAAAACTATCTGaatattgtattactgcacacagtttacatttatatatagactTTTTGAAGTTGTGCTGTGCAGATGTGGGGGGGTGCGTGCAGG

Function

GO: NA

KEGG:

id description
K07442 TRM61, GCD14; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004060 True 2371 mRNA 0.58 7 30969679 30973496
TU6645 False 673 lncRNA 0.39 1 30972820 30973492

Neighbor

gene id symbol gene type direction distance location
AMCG00004063 eprs,LOC107679779,LOC107732550,LOC107662594 coding downstream 13793 30950855 ~ 30955886 (-)
AMCG00004062 NA coding downstream 23689 30940156 ~ 30945990 (-)
AMCG00004061 slc30a10,ypel5,LOC107601641,LOC107672346,LOC107683860,LOC107568027 coding downstream 32370 30932303 ~ 30937309 (-)
AMCG00004053 NA coding downstream 87171 30860092 ~ 30882508 (-)
AMCG00004054 ppp1cb,LOC104966956,LOC107583611 coding downstream 113620 30850875 ~ 30856059 (-)
AMCG00004068 NA coding upstream 39649 31013145 ~ 31022165 (-)
AMCG00004069 NA coding upstream 93815 31067311 ~ 31075673 (-)
AMCG00004070 NA coding upstream 103417 31076913 ~ 31091307 (-)
AMCG00004072 NA coding upstream 346099 31319595 ~ 31320594 (-)
AMCG00004074 NA coding upstream 564412 31537908 ~ 31539407 (-)
G5393 NA non-coding downstream 10565 30890186 ~ 30959114 (-)
G5387 NA non-coding downstream 123378 30843678 ~ 30846301 (-)
G5333 NA non-coding downstream 156096 30813295 ~ 30813583 (-)
G5330 NA non-coding downstream 167104 30800763 ~ 30802575 (-)
G5315 NA non-coding downstream 226512 30742779 ~ 30743167 (-)
G5432 NA non-coding upstream 15376 30988872 ~ 30990100 (-)
G5463 LOC108443926,LOC105894840 non-coding upstream 396504 31370000 ~ 31371409 (-)
G5465 NA non-coding upstream 413088 31386584 ~ 31387033 (-)
G5467 NA non-coding upstream 560451 31533947 ~ 31534379 (-)
G5476 NA non-coding upstream 697867 31671363 ~ 31671579 (-)
AMCG00004052 NA other downstream 74855 30813781 ~ 30894824 (-)
AMCG00004041 NA other downstream 693452 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 749544 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 1640564 29324741 ~ 29329115 (-)
AMCG00003967 LOC107095448 other downstream 4100101 26830354 ~ 26869578 (-)
G5502 NA other upstream 1335984 32309480 ~ 32309910 (-)
G5540 NA other upstream 1434306 32407802 ~ 32426563 (-)
G5566 NA other upstream 1620131 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 2592590 33566086 ~ 33567325 (-)
AMCG00004116 NA other upstream 2901945 33875441 ~ 33918321 (-)

Expression


Co-expression Network