AMCG00004062


Basic Information

Item Value
gene id AMCG00004062
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30940156 ~ 30945990 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004062
ATGCAGATGGTGGGCGTGGGCAGGGCGCGGGGTGTGGATGCCAGCCATgaccaggtggACGCTGCAGTGAAGGAGCTGCTGGCTCTGAAGGCCCAGTTCAAACAGCTGACGGGGCAGGACTACAAACCTGGCATGgccccccccagccctgcccCTGCACAGTCTAACCCCGCCCCACAGAAGTCAACCCCTGCCCCCAGTCAACCCAGCTCCACCCCTGAGGTCCAGGCACTGTTTGCAGAGGTGTCCCAGCAGGGGGAGCTGGTGCGCAGACTGAAAGCGGAGAAAGCCTCTAAGgaccaggtggATGGTGCAGTAAAGTCCCTGCTGGACCTGAAGTCTCGGTACCGCACGCTGACTGGAGAGGAGTACCGACCCGCCGGCACCCCCCCAGCAcaggacaagaagaagaaggagaaggagaacaaGAGTGAGAAGCAGCAGAgcggagcaggagcaggaggaggaggaggagggcgtAAAcaaggaggcggaggaggaaaAGAGCCACCCCAAGACCAGGAGAAGAATGCAGGGAGTGGAGGGgctggagggggagaggggccCAAGAAACAGACacgCGGCTGCTACGTGCTGCGGCCCTGGTCCTACTCCATCTGGGAGACCATCCAAGAGTTCTTTGACGGCGAGATCAAGAAGCTGGGCGTGGAGAACTGCTACTTCCCCATGTTTGTCTCGCAGGCCGCCCTGGAGAAGGAGAAGTCTCATATCGCCGACTTTGCGCCCGAGGTGGCCTGGGTGACTCGCTCTGGGAAGACTGAGCTGGCCGAGCCCATCGCTGTCAGACCGACCAGCGAGACGGTGATGTACCCAGCCTATGCCAAGTGGGTGCAGTCTCACAGGGACCTGCCAATCAAACTCAACCAGTGGTGCAACGTGGTGcggtGGGAGTTCAAACACCCCCAGCCCTTCCTGAGGACCAGGGAGTTCCTGTGGCAGGAGGGGCACACGGCCTTCGCCACCAAGCAGGAGGCAGAGGTGGAGGTGTTGCAGATCCTGGAGCTCTACGCCCGGGTGTATGAGGAGCTGATGGCGATCCCTGTGGTGAAGGGAAAGaagacagagaaggagaagtTCGCCGGGGGGGATTACACCACCActgtggaggccttcatctCCGCCAGTGGCCGTGCCATACAGGGCGCCACCTCTCACCATCTGGGTCAGAACTTCTCACGGATGTTTGAGATCGTGTTTGAGGACCCTCGGCAGCCAGGGGAGAAGCAGTTTGCCTACCAGAACTCGTGGGGCCTGACAACTCGCACCATCGGGGTGCTGGCCATGCGCGAGGCCCTGCTGTCCCGCTGTGCTCAGTACCTGGAGCGACTGACCCGCTGCGGCCTGCGTGCCCGCTGTGACACCCGTGACAACTACTCTCCTGGCTGGAAGTTCAACCACTGGGAGCTCAAGggcgTGCCGGTGCGAGTGGAGGTGGGTCCGCGCGATGTGaagctgtgtcagtgtgtggccGTGCGCAGGGACACGGGGGAGAAGATCACCGTGCCCGACGCCGAAGCAGAGCCGCGCCTCACACAGCTGCTGGATGACATTCAGAAGAACCTGTACAGCagGGCGTCTGAGGATCTGAGGAAACACATGGTGGTAGTAGACAACATGGAGGACTTCCAGAAAGAGCTGGACCAGGGCAAGatTGTACAGATCCCATTCTGCGGTGGCATTGAGTGTGAGGACTGGATCAAGAAGACCACTGCC

Function

GO:

id name namespace
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14163 EPRS; bifunctional glutamyl/prolyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004062 True 1734 mRNA 0.61 13 30940156 30945990

Neighbor

gene id symbol gene type direction distance location
AMCG00004061 slc30a10,ypel5,LOC107601641,LOC107672346,LOC107683860,LOC107568027 coding downstream 2847 30932303 ~ 30937309 (-)
AMCG00004053 NA coding downstream 57648 30860092 ~ 30882508 (-)
AMCG00004054 ppp1cb,LOC104966956,LOC107583611 coding downstream 84097 30850875 ~ 30856059 (-)
AMCG00004055 NA coding downstream 111651 30827123 ~ 30828505 (-)
AMCG00004046 NA coding downstream 158390 30779865 ~ 30781766 (-)
AMCG00004063 eprs,LOC107679779,LOC107732550,LOC107662594 coding upstream 4865 30950855 ~ 30955886 (-)
AMCG00004068 NA coding upstream 67155 31013145 ~ 31022165 (-)
AMCG00004069 NA coding upstream 121321 31067311 ~ 31075673 (-)
AMCG00004070 NA coding upstream 130923 31076913 ~ 31091307 (-)
AMCG00004072 NA coding upstream 373605 31319595 ~ 31320594 (-)
G5387 NA non-coding downstream 93855 30843678 ~ 30846301 (-)
G5333 NA non-coding downstream 126573 30813295 ~ 30813583 (-)
G5330 NA non-coding downstream 137581 30800763 ~ 30802575 (-)
G5315 NA non-coding downstream 196989 30742779 ~ 30743167 (-)
G5273 NA non-coding downstream 386938 30552977 ~ 30553218 (-)
G5432 NA non-coding upstream 42882 30988872 ~ 30990100 (-)
G5463 LOC108443926,LOC105894840 non-coding upstream 424010 31370000 ~ 31371409 (-)
G5465 NA non-coding upstream 440594 31386584 ~ 31387033 (-)
G5467 NA non-coding upstream 587957 31533947 ~ 31534379 (-)
G5476 NA non-coding upstream 725373 31671363 ~ 31671579 (-)
AMCG00004052 NA other downstream 45332 30813781 ~ 30894824 (-)
AMCG00004041 NA other downstream 663929 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 720021 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 1611041 29324741 ~ 29329115 (-)
AMCG00003967 LOC107095448 other downstream 4070578 26830354 ~ 26869578 (-)
AMCG00004060 NA other upstream 23689 30969679 ~ 30973496 (-)
G5502 NA other upstream 1363490 32309480 ~ 32309910 (-)
G5540 NA other upstream 1461812 32407802 ~ 32426563 (-)
G5566 NA other upstream 1647637 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 2620096 33566086 ~ 33567325 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01057485_00000004_00002119 EPRS coding CI01057485 null 4 ~ 2119 (-)