AMCG00004063 (eprs,LOC107679779,LOC107732550,LOC107662594)


Basic Information

Item Value
gene id AMCG00004063
gene name eprs,LOC107679779,LOC107732550,LOC107662594
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30950855 ~ 30955886 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004063
ATGGCTTTAAAGCTCATCATCAACTCCAGCAGCCCACCGCTAGttcctgtgtgtgtgcctgcagGCGTGCTGTTGACGGTGGAGCATGTGAAGAACAGCGTGAGTGTGTCAGTGGAGGATGGAAAAGACACCAACCTGCACATCTCAGActctgtgCAGTTTAGTGACGTGAACTCCATCACTCGGTACCTGGCTCGGGTTGCCCCCAGTCTGGGCCTGTATGGCGCCAACCTACTGGAGCAGACTGAGGTTGATCACTGGCTGGAGTTCAGTGCCAGACTGTACCAGCGCTCCCTAGCCCCTGCTCTCGCCCAGCTCAACAATGCCCTCTGTCTGCGCACCTTCCTGGTTGGGCAGAGCCTGACCTTGGCTGACCTTAGTGTCTGGGCCGCGCTCAAAGACAGTTCCTCCTTGCAGTCTCTCCTATCTGTGGAAGGCACAACCCCCCATGTGAAGCGCTGGTTCAGTTTCCTCAGCTCTCAGGGCCCCTTCAAAGCTGTGGCGGAGAAATGCGGCACGCCCAGAGCCGCCCCCCGCAACGGAGGGCAGTCCTCAGAGAAACGTGCTGACGTAGGGAAGTTTGTGGAGCTGCCTGGGGCTGAACTGGGCAAGGTGGTGGTGCGTTTCCCCCCCGAGGCCAGCGGgtACTTGCACATCGGTCATGCCAAAGCTGCTCTGCTGAACCAGCATTACCAAGTCAACTTCAAGGGCAAACTGATCATGCGCTTCGACGACACCAACCccgagaaggagaaggaggactTTGAGAAGGTGATTCTGGAAGACGTGGCTCTGCTGCAGATCAAGCCGGACCAATTCACCTACACCTCGGACCACTTCCCTCGCATCATGGGGCTGGCGGAGCAGCTGCTGAAGGAGGGCCGCGCCTACATCGACGACACGCCCCCCGAGCAGATGaagcaggagagggagcagaggCAGGAGTCGCACAACCGCTCAAACAGTGAGGCCCTGCTCTGCCACACGCCCCACAGCACGACACACAGCTGCACAACCGCATACACCGCTGTggtgtACCCCACGTATGACTTCGCGTGCCCCATCGTGGACAGTGTGGAGGGGGTGACCCACGCGCTGCGCACCACGGAGTACCACGACCGCGACGAGCAGTTCTACTGGGTGATCGAGTCGCTGGGCCTGCGCCGACCCTACATCTGGGAGTACGCCCGGCTCAACCTCAACAACACCCTGCTGTCCAAGAGGAAACTCACCTGGTTCGTGGACCAGGGCCTTGTGGACGGCTGGGATGACCCCCGGTTCCCCACAGTGAGGGGGGTGCTGCGCAGGGGCATGACGGTTGAGGGGCTGAAGCAGTTCATTGCCGCACAGGGTGGGTCCAGGTCTGTTGTGAACATGGAGTGGGACAAGATCTGGGCGTTCAACAAGAAGGTATAG

Function

symbol description
eprs Predicted to enable several functions, including RNA stem-loop binding activity; proline-tRNA ligase activity; and protein homodimerization activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; prolyl-tRNA aminoacylation; and regulation of long-chain fatty acid import into cell. Predicted to act upstream of or within cellular response to interferon-gamma. Predicted to be located in cytosol and plasma membrane. Predicted to be part of GAIT complex; aminoacyl-tRNA synthetase multienzyme complex; and ribonucleoprotein complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human EPRS1 (glutamyl-prolyl-tRNA synthetase 1).

NR:

description
PREDICTED: bifunctional glutamate/proline--tRNA ligase isoform X2

GO: NA

KEGG:

id description
K01885 EARS, gltX; glutamyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004063 True 1416 mRNA 0.60 11 30950855 30955886
Loading

Neighbor

gene id symbol gene type direction distance location
AMCG00004062 NA coding downstream 4865 30940156 ~ 30945990 (-)
AMCG00004061 slc30a10,ypel5,LOC107601641,LOC107672346,LOC107683860,LOC107568027 coding downstream 13546 30932303 ~ 30937309 (-)
AMCG00004053 NA coding downstream 68347 30860092 ~ 30882508 (-)
AMCG00004054 ppp1cb,LOC104966956,LOC107583611 coding downstream 94796 30850875 ~ 30856059 (-)
AMCG00004055 NA coding downstream 122350 30827123 ~ 30828505 (-)
AMCG00004068 NA coding upstream 57259 31013145 ~ 31022165 (-)
AMCG00004069 NA coding upstream 111425 31067311 ~ 31075673 (-)
AMCG00004070 NA coding upstream 121027 31076913 ~ 31091307 (-)
AMCG00004072 NA coding upstream 363709 31319595 ~ 31320594 (-)
AMCG00004074 NA coding upstream 582022 31537908 ~ 31539407 (-)
G5387 NA non-coding downstream 104554 30843678 ~ 30846301 (-)
G5333 NA non-coding downstream 137272 30813295 ~ 30813583 (-)
G5330 NA non-coding downstream 148280 30800763 ~ 30802575 (-)
G5315 NA non-coding downstream 207688 30742779 ~ 30743167 (-)
G5273 NA non-coding downstream 397637 30552977 ~ 30553218 (-)
G5432 NA non-coding upstream 32986 30988872 ~ 30990100 (-)
G5463 LOC108443926,LOC105894840 non-coding upstream 414114 31370000 ~ 31371409 (-)
G5465 NA non-coding upstream 430698 31386584 ~ 31387033 (-)
G5467 NA non-coding upstream 578061 31533947 ~ 31534379 (-)
G5476 NA non-coding upstream 715477 31671363 ~ 31671579 (-)
AMCG00004052 NA other downstream 56031 30813781 ~ 30894824 (-)
AMCG00004041 NA other downstream 674628 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 730720 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 1621740 29324741 ~ 29329115 (-)
AMCG00003967 LOC107095448 other downstream 4081277 26830354 ~ 26869578 (-)
AMCG00004060 NA other upstream 13793 30969679 ~ 30973496 (-)
G5502 NA other upstream 1353594 32309480 ~ 32309910 (-)
G5540 NA other upstream 1451916 32407802 ~ 32426563 (-)
G5566 NA other upstream 1637741 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 2610200 33566086 ~ 33567325 (-)

Expression

AMCG00004063(eprs,LOC107679779,LOC107732550,LOC107662594) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

AMCG00004063(eprs,LOC107679779,LOC107732550,LOC107662594) Expression in each Bioproject

Bar chart with 7 bars.
AMCG00004063(eprs,LOC107679779,LOC107732550,LOC107662594) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G258325 NA unknown CI01000062 null 13737 ~ 13821 (-)