AMCG00004066


Basic Information

Item Value
gene id AMCG00004066
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 31047145 ~ 31062709 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004066
TGTTGGACCTTTCCCCCAGGCAGCAGCTCTTtagctctttctctctctggtcATATCTATTTTCATGGAGGACTCGCCGGACGCCTCTCCTATCCCTCTCAGTCCCAGCAACAGCTGTGAGCAGGAGATGACGCGGGAGGATGTGCGGGAGCTGTCCTCAGAGGGAGACTCTGCGCTGGGAAGAGCCAGCAGCCCGGTCCCTGGCTCGGACAGGCCTGTCGTACACCAGGTGGCCTCTGCACCCATGCCCTCAGACTGCGAATTCTCCTTCTTTGACCCGAACGAGCCGAAGTGCCGGGCCATCCTGCTGGACCCTCAGACCTCCGTGTCGGAGCTGTTTGCTGTGCTGCGCCAGTGGGTCCCCCAGGTCCAGCAGAACATCAGCCTGATTGGAAATGAGATTCTGAAGCGCGGGTGTGGAGTGAACGACCGCGATGGCCTGACTGACATGAGCCTGCTGCACTACACCTGCAAGGCGGGGGCCCCGGGGATaggagaCGCGGAGGTGGCAGCTAGCTTTGCGAGGCAGTTACTGTCTCTGGGGGCGGAGCCGGGGCTGCGCTCACGCTGGACCAACATGAGCCCCCTGCACTACGCTGCCTATTTTGACGTCCCTCCTCTGATCACCACTGTGCTGCTCGCCGCCCAGCCAGGGGAGGTGGACGTCACCTGCAGTGACTTTGACTTTGGCACGGCTCTGCACATCGCTGCCTCCAACCTGTGTGTGTCGGCCGTGCGCTGTCTGCTGCAGCATGGGGCCAACCCCGCCTTCAGGAATGAATGTGGCCAGTGCCCTGTGGACGTGGTGCCTGAGCCTCTGGACATGCCCCTGGAGATGGCGGACGCTGCTGCCCAGGCCAAGGAGTTGAGACAGCTGCTGAGGGAGGCACTGCCTCAACCCGCCTCCCTCCCGCTCCTCCCCTCACCCCGCCGCCCTCACAGGAGCCCCAGGACCAATCAAAACACCCCAGACTCCAGCTCCAGCCGGGGCCTGCTGGCATCACTGGGGCTGCGTCTGGGAGATAGGGTCATCATCGCTGGACAGAAGTGGGCTGGGGTGGAGCTGGAAGACCCCGAGGGGAAGAATGATGGCTCGGTCGGGGGGGTGCAGTACTTTACCTGCCGGCCCAAACACGGCATCTTCGCCCCCGTGTCAAAGGTCACCCGGGTCGGGGAGTGGCGCCGGACCATGGTGCGCAGCTCCACTCCACTGCGGGGGGGGCGGCCCGACCTGTCCCACATCACAGCCAGAGTCAACACAGgttCTCCTTCTTTTCTAGGCTCCAGtcgttcctcctcctcctcctctctggaTTCCAGACAGCCCTCCAGTGTCCGGCTCCGACCCTCACCACGGGCGCGCCCCCCTGCCCGCCCCAGGAGGGAGAGAGCCCCTAGCAGTGCCAAGGCAGCGGCCCCTGGTGCCCGCACGCCCGCTGGCCCCCGGATGCGAAGGCCCTCGGTGAGCAGCGCCGTGTCCgtaggggaggagggggaggtgcAGCTCGGCGAGCGTGTGCTGGTGGCGGGACAGAGGACCGGCCTGGTGCAGTTCTGTGGCAACACCAGCTTCGCCCCTGGCCTGTGGTTAGGGATCGAGCTGGACAAACCCAGTGGGAAAAACGATGGCTCTGTGGGGGGGGTACAGTACTTCAAATGTCCCCCCAAACACGGCGTCTTCGCCCCTCCCTCCAGGGTACAGCGGATCCATGGCTCCCTGGACTCTCTGACTGATCTCTCCTCTGCCCGGCTCAACCACTCCTTCCCAGGAATCCGGCGAAGCTTCAGCACGTCATCCACTCTCTCTGCTCACAGGGACCTCAGCCGGAGGAGCCCAGTCAACAGgtctCGGCCTGCCGGGCTGCGGCGCAGTTGGAGCACTGCAAGCGCGGGCAGCCCGGGGGTGGCCCACTTCTCTGGGACGCCCACGCCCTGGTCCTCAGACGGTGGCGTGAAACTGCACCTGGGCATGACTGTCCTGCTGAGCAGCGCCAATGAGATGGGCGTAGTGCGCTACCTGGGGCCGGCGGACTTCGCCCCCGGGCTGTGGGTCGGCCTGGAGCTGCGCGGCGCCAAGGGCAAGAACGACGGCTCGGTGGGCGAGCGGCGCTACTTCAGCTGCCGGCCGGGACATGGGGTCCTGCCTGAGTCCCGGAGTGCTCCTGTGAATTGGCCAACTCTAAAGCCTTGTCCCACGGGTCACTCAAGGATGGAGAAGTGCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004066 True 2224 mRNA 0.65 17 31047145 31062709

Neighbor

gene id symbol gene type direction distance location
AMCG00004067 NA coding upstream 7408 31030418 ~ 31039737 (+)
AMCG00004065 NA coding upstream 57045 30974976 ~ 30990100 (+)
AMCG00004057 NA coding upstream 77941 30961633 ~ 30969204 (+)
AMCG00004064 NA coding upstream 99668 30945472 ~ 30947477 (+)
AMCG00004058 NA coding upstream 118654 30924788 ~ 30928491 (+)
AMCG00004071 LOC105894840,LOC108443926 coding downstream 307673 31370382 ~ 31371158 (+)
AMCG00004078 NA coding downstream 1242782 32305491 ~ 32329172 (+)
AMCG00004075 NA coding downstream 1272683 32335392 ~ 32346595 (+)
AMCG00004080 bre coding downstream 1365750 32428459 ~ 32428913 (+)
AMCG00004083 bre,LOC104968080 coding downstream 1386698 32449407 ~ 32455846 (+)
G5417 NA non-coding upstream 54245 30992606 ~ 30992900 (+)
G5297 NA non-coding upstream 268875 30778047 ~ 30778270 (+)
G5291 NA non-coding upstream 306272 30740564 ~ 30740873 (+)
G5272 NA non-coding upstream 493931 30552977 ~ 30553214 (+)
G5271 NA non-coding upstream 501620 30545287 ~ 30545525 (+)
G5482 NA non-coding downstream 723625 31786334 ~ 31786883 (+)
G5490 NA non-coding downstream 966295 32029004 ~ 32029301 (+)
G5493 NA non-coding downstream 1128611 32191320 ~ 32191542 (+)
G5499 NA non-coding downstream 1206039 32268748 ~ 32269071 (+)
G5501 NA non-coding downstream 1246796 32309505 ~ 32309912 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 152318 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 739970 30296867 ~ 30307175 (+)
G5245 NA other upstream 775621 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 1505787 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 2363164 28640174 ~ 28683981 (+)
AMCG00004079 NA other downstream 1337696 32400405 ~ 32402383 (+)
G5642 NA other downstream 2067411 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 3790154 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 4689741 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 4964570 36027279 ~ 36045282 (+)

Expression


Co-expression Network