AMCG00004068


Basic Information

Item Value
gene id AMCG00004068
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 31013145 ~ 31022165 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004068
ATGGGCTGCTCCCCATCCAAGGGCAGCGGGATCCACAGCCTGGCAGGCAACAGATTAGGCTCCTTCAGGAGGGGCCAGACGCTACGACCAGGGCCCATTGAGAGCACAGGGGAGTCCATGTCGGATGACAGCCCTGGAGAGACCGATGGAGAGAGCTcggggagaggagggagaggagaaggaaaaggaagaggtgagaatgCTGTCTACCAGTCTTCCCCCTCCCTGGAAGAGACCCCTGTGGCCCCCCAGCAGAGGAGACCCTCACTGCCTGAGCCCACGTCCTCAGAGGCAATACACCCAGAGAGGGCCAGCACCCAAGAAGCCCAGGTCAGTGTGGGCCCAGAGGTGCAGGGGGAGCTCAGGGAGGACAAGCAGGGAAGGAAGGGAGTGAAGAAGCCTAAGAAGGGGAAAGGAGGAAGGCAGGGCAGGAGGAAAGACAAGGAGAAGAGAACCCCCACACTTGAAGAGAAGGTGGACTTCCCTGAGCCGCTGGTCAAAGCACACCAGGCCGCCTATGCCTACCTGAACCCCAGCATCTCCCGGTATGAAGCCCTACTGGGGCTGCTGGACCAGGCAGCGCAGACGCAGCTCGCCCTGCAGCCCATGGCCACTTTCCTGGCACTGCGCTTCGAGGAGGTGAACCGCGCATTGACTGAGATCACAGAGGACGGGGAGAGACTGCTGAAGGAGAACGGAGAGCACCTGGCCTGGCCTGCCCCTGCAGTGAAGGCCGGTGCACCCATCAAGACTGCCCCCACTGATCCACCCCCGgacctgctgcagcagctgctccaGTACACCGTGCAGAGGATGCAGCTGGTGGGAGGCTCTGTGGGCCGGCTGGGGGACAAGGCATTGGAAGAGGCGGCAGAATATTTTGGCTCCCTGGCGGAGCTGCTGGAGGAGAAGCTGAAGACCAAGCAGGCCCTGGAGGGGCGGCTGGCTCGGGTCCTCACCCGCATGGAGGCAGCTGCCCTGAAGAAGCCGCTGCCCGAGGACTCTGCCCTGCACTCTGAGGACAGCGGCATCGGCGCCGAGAGCGAGTCGCTGGCCGGGTCTGAGAGGCACCAGCAGAGGCGCCAGAGCTGCGAGTCCAAGTCCGATGAGTCCCCTGGCctttgccccccccccagggATGCCAAAAATAAGAACAGCTATGCCAGCAGGGATGGCTCAGTGACTCTCCACGAGGCATCGAAGCCCCGTCTGTCAGACATTTCCAGAGAGGGCAAGATGTGTAGCAGCCTGTCGCTCAGCTCCTTGCACTCTACCTGCACCCTCACAGCTGGAGATCAGAGAGACACCGAGTCCCTGTTGGGCTCTGCTTCTCTGGACGAGGGAGACGACAAcgaagaggaggatgaggaagaggaagaagaggaggaggaggaggaggaagagggagaaaatGGGGAGGAAGATAGGGGCAGACGGCGTCGCTTCAACTCCTCACCAGCCGTCCCCAACCTGCCTGTAACACTGGTTCCTCGACCCGCGCCCAAGGGCCTGGAGAGCCCAGCCAACGCGGAGCTGACTCTGAAGATGAAGGATGCCATCAGTGGGCGGATCCGCTATGTGTCCACATCCCAGCGCTCTGGCAACGGCAACAGCATCCGGCGTGGAGAGAGCAGTGGGAATGGCGCTCCCACCTGGACAGAGGAAGAAGACACCAAGCAGCCCAAGCGCCCGCAGACAGCCGCTGGGGTCAGGGGGGCAGGGAAGCGGAGAGGTGTGGCGATGAAACAGCGGCGCTCCAGATCTGCTGAGTCCCTTCGCAGCCAGGCAGAGGACCCCACCCTGCTGGAGCTGCAGAGGACACAGAGGGACCTGGGCTGCCGGCTGGAGAGGATGGGCCAAGGCCAGGGGGAGATCGACAGAACCAAGGGGGCCAAACCCAAACTGAACGGGGAACAGCCATCCCAGACCAGCAACCTCGCCTCCGCTGCCAGCAGCCGCCTGCGCTCCTCCCTAGACAAGAACTTTAGCATCCTACCCAGCCAGGAGCGGCCAGGGCTGCACAGGAACAGCGTGGGGGAGCAGGGGGTGGAGAccagggaggaagaggaggagcacaggaggaaggagagaagggGGTCGGAGAAGGGTCCACTTAGAGCCAAACCCCCTGACAactgctccctccctccacagGCCCCACAGCCCCCCACCACCCAGAGAGGCAGGAGCTCTGTAAAGAGGCTGATCGACACCTTCAGTCAGGGCGCAGCAGAGAGGCAGAGTCCCACCAAGACCCTGGCACCTCTCAAAGGGGTGCGGAAGTGCGGGGTGTCCATTCTTCCAGGTCAGAGCaatagcaacagcaacaacagcagtaGGGTTGACTCCAGGCTGTCTGAGGGTGACAGACATGAGGAGGTGGATTTGGACAGCTTGCCACCTCCCCCACCCGAGGTCCTGCAGGACAACTCCTTTGAATGTTCAGAGATGCCCCCCAGTGGTCACATTGAGGAGGGCAGCCTGAGCAGGGGGCGCTCCCTGCTGCCCCAGAGGACCACGGCCACCCAGCGGCTCCGGGCCTCACTGAACTCTGTGACGGTGCTGCCCAGCCGGAGCAGCCTGCGACGCAGCTCTCTCAGCCTGTCCCCAGCACGCTCTGGCAGGCAGGGGGCCACACAGGCAGGAGGAGGCGGTGGGGCAGCGTCCCGGAGCAGCTCCCAGGAATCGCAGCCCGATGCCGACCCAGAGAACGAGGAGGCAGCCAGCCTGTACCGGCATGCCCGCAAAATCATCCACCTGCGGCACTCTGTAGAGTCCCCGAGCTCCCCGGAAAAACCCAACACGGTCACGGGGGGCAGGAAAGCCTCACCGAATCAAGGAGGGGCGGCTGCCACGAGAGGAGTAGGCACTGGCACTGAGGCAGCCTCTACTTCCACCTCCACCTCTACCTCTCCATCTGCCTCCACCCATCCCAAGATGTCCTCACAGGGTGGCCAAGCCCCTCCCCGAGGCAGGATGCTGCCCTCCACGCCCtccaccacctccaccacctCCAACTCCTCCACCCCCTCCAACCTCTCCGCCCTGCACCGCCGGCTGCCCAGCCCACCCACTTTCCGACACCAGCCCACACCCCCCACACCCACttgcccccctgccccccggAAGCTCCCCAGTCCCCCTCCAGGCCCGAGGAAGCTGCCCAGCCCCCCCCAGCTTCGCCGTTTGGTCAGTCCGTCCAACACGCAGTGGAAACCCATGACGCCCACTTCCTCCCATCATTCCTCTTTCGCCAAGACCCCCTCGCCCCCAGCCTCACCCCACACATACCACAGACGGACTCTAGGGGGCAGCAGTGAGGAGGGATCAACACCaccttcttcctcctcctcttcctctcgcATTCTCAGCAACGCCCGCTCTGTGTTCTGCCCCGCATCCCGCTCAATGTTCGAGGCCCAGCCACCCCCAGCCCCACAGGCGTGGCCCCTCCCCGGTGGCTGTGTGCTCCCTCGGCCCTGGGGGGAGCGGCCGTCCCGAGGTCGGCTACCCCTGGCCTCCACACGCAGCCCCCAGCCCTTCGTCAAGCGCAGCTTCTCGGACCGCCGGCCCAGCCTGAACCTCAACCCCCAGCCGCCCCTCTCCTCCACCGACTCCCTCGGCTCCGTTGGCTCTGGCAGCGAACCCGCCATCTACAGCCAGGGCCTGGAGGAGGGCCCACTGAGGGAGGGGGAACCATGGGACCAATCAGAGCTCAGGACTGCCAATCGCTCTGCCTCCCACCCGGAGCTTTGCATCGTGGGTCAGGGCTTTCAGATCGACTGA

Function

GO: NA

KEGG:

id description
K24165 PCARE; photoreceptor cilium actin regulator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004068 True 3786 mRNA 0.64 2 31013145 31022165

Neighbor

gene id symbol gene type direction distance location
AMCG00004063 eprs,LOC107679779,LOC107732550,LOC107662594 coding downstream 57259 30950855 ~ 30955886 (-)
AMCG00004062 NA coding downstream 67155 30940156 ~ 30945990 (-)
AMCG00004061 slc30a10,ypel5,LOC107601641,LOC107672346,LOC107683860,LOC107568027 coding downstream 75836 30932303 ~ 30937309 (-)
AMCG00004053 NA coding downstream 130637 30860092 ~ 30882508 (-)
AMCG00004054 ppp1cb,LOC104966956,LOC107583611 coding downstream 157086 30850875 ~ 30856059 (-)
AMCG00004069 NA coding upstream 45146 31067311 ~ 31075673 (-)
AMCG00004070 NA coding upstream 54748 31076913 ~ 31091307 (-)
AMCG00004072 NA coding upstream 297430 31319595 ~ 31320594 (-)
AMCG00004074 NA coding upstream 515743 31537908 ~ 31539407 (-)
AMCG00004073 lrfn2,LOC106597048,LOC106582474 coding upstream 536518 31558683 ~ 31568015 (-)
G5432 NA non-coding downstream 23045 30988872 ~ 30990100 (-)
G5393 NA non-coding downstream 54031 30890186 ~ 30959114 (-)
G5387 NA non-coding downstream 166844 30843678 ~ 30846301 (-)
G5333 NA non-coding downstream 199562 30813295 ~ 30813583 (-)
G5330 NA non-coding downstream 210570 30800763 ~ 30802575 (-)
G5463 LOC108443926,LOC105894840 non-coding upstream 347835 31370000 ~ 31371409 (-)
G5465 NA non-coding upstream 364419 31386584 ~ 31387033 (-)
G5467 NA non-coding upstream 511782 31533947 ~ 31534379 (-)
G5476 NA non-coding upstream 649198 31671363 ~ 31671579 (-)
G5483 NA non-coding upstream 764169 31786334 ~ 31786944 (-)
AMCG00004060 NA other downstream 39649 30969679 ~ 30973496 (-)
AMCG00004052 NA other downstream 118321 30813781 ~ 30894824 (-)
AMCG00004041 NA other downstream 736918 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 793010 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 1684030 29324741 ~ 29329115 (-)
G5502 NA other upstream 1287315 32309480 ~ 32309910 (-)
G5540 NA other upstream 1385637 32407802 ~ 32426563 (-)
G5566 NA other upstream 1571462 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 2543921 33566086 ~ 33567325 (-)
AMCG00004116 NA other upstream 2853276 33875441 ~ 33918321 (-)

Expression


Co-expression Network