AMCG00004071 (LOC105894840,LOC108443926)


Basic Information

Item Value
gene id AMCG00004071
gene name LOC105894840,LOC108443926
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 31370382 ~ 31371158 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004071
ATGCTGGAGGACATGCGGACGATGGAGACGTTTTACTGGGAGGAGAATGCCAGCCAGCGCACCTACTCCCCCTCCGAGGCGCTGCTGTACGCCGTGGTGCACGACCACCAAGCCTACGCCCAGCACCTGCTGAGTCACTACTCCGAGGCGGCGCTGGACATGCCGGGCGAGCGCTTCTGCTGCTGCGAGTCCTCCGCGCCGCACCTGGCCATGGCCGTCAGGTACGACCGGCGGGACATCCTGGTGCTCATCCTACAGGTGGCGCACCGGCTCCCCGGCCTGCGCTCCTATTTGAACCGCCGGGGCTGCTTCCATCTGCAGGACGGGAAGACGCCGCTGCACCTGGCCTGTGAGCTGCTGCGCTCCGAGGCCGTGCTCCTGCTGCTGGGCAGCGGCGCGTCGCCCCAGGCAGAGGACCACAAGGGCATGACCCCGCTGGACGTGGTGCTGGAGCAGCTGTGGGACTCCAAGGTGAACGTGGGCGCCAAGAAGCTCTGTCTGGACAACCTGCTGCTGTTCATGCCGGGGATGCGCTTCAAGATGAAGGGCTCCCTGGAGAGGGAAGCCGCTTGCTGGACGAAGGTGCTCGGGGAGGATAAATTCAGCTACCTCGCTGGGAAAAGCCCGGCCCCTCTGTTTCTCTTAGCTATGCAAAGGatcctgcagctgctgccacCCGAGCAGTTCCCCGAGAGCCTGCAGCAGCTGCCCATCCCCAGCGCGCTGAAGCCGCTGCCCCTGTCCTGCAAGCAGCGGGGCCACTTGCATATAACCTGA

Function

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004071 True 777 mRNA 0.65 1 31370382 31371158

Neighbor

gene id symbol gene type direction distance location
AMCG00004066 NA coding upstream 307673 31047145 ~ 31062709 (+)
AMCG00004067 NA coding upstream 330645 31030418 ~ 31039737 (+)
AMCG00004065 NA coding upstream 380282 30974976 ~ 30990100 (+)
AMCG00004057 NA coding upstream 401178 30961633 ~ 30969204 (+)
AMCG00004064 NA coding upstream 422905 30945472 ~ 30947477 (+)
AMCG00004078 NA coding downstream 934333 32305491 ~ 32329172 (+)
AMCG00004075 NA coding downstream 964234 32335392 ~ 32346595 (+)
AMCG00004080 bre coding downstream 1057301 32428459 ~ 32428913 (+)
AMCG00004083 bre,LOC104968080 coding downstream 1078249 32449407 ~ 32455846 (+)
AMCG00004081 bre coding downstream 1128315 32499473 ~ 32529839 (+)
G5417 NA non-coding upstream 377482 30992606 ~ 30992900 (+)
G5297 NA non-coding upstream 592112 30778047 ~ 30778270 (+)
G5291 NA non-coding upstream 629509 30740564 ~ 30740873 (+)
G5272 NA non-coding upstream 817168 30552977 ~ 30553214 (+)
G5271 NA non-coding upstream 824857 30545287 ~ 30545525 (+)
G5482 NA non-coding downstream 415176 31786334 ~ 31786883 (+)
G5490 NA non-coding downstream 657846 32029004 ~ 32029301 (+)
G5493 NA non-coding downstream 820162 32191320 ~ 32191542 (+)
G5499 NA non-coding downstream 897590 32268748 ~ 32269071 (+)
G5501 NA non-coding downstream 938347 32309505 ~ 32309912 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 475555 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 1063207 30296867 ~ 30307175 (+)
G5245 NA other upstream 1098858 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 1829024 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 2686401 28640174 ~ 28683981 (+)
AMCG00004079 NA other downstream 1029247 32400405 ~ 32402383 (+)
G5642 NA other downstream 1758962 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 3481705 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 4381292 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 4656121 36027279 ~ 36045282 (+)

Expression


Co-expression Network