AMCG00004072


Basic Information

Item Value
gene id AMCG00004072
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 31319595 ~ 31320594 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004072
ATGACGAACAAGGGACTGCATCTCTTACTTTTCTCAGCGGTGTGTCTGACCGAACTGCGGTGCACTTCCCAAAAGGTCCCTCTGTCCACCGCCAACATTACTGGCAGTGGGGATGCCAGCGGCAAGAAGGACACCAACCAGACCTACTTTTCCCGACTCAAGAGGAAGAACCTGTCCGTGGATTTTGTCATCCCGTCTCTCTTCCGAACCTACCTGTCTGAGCTGATCAAGCGCCCGCTGGACGGCCAGTGCCAGGATTACAATGCGTGCTACACCGTGCAGTCCCACTTGAAGATGCAGTGCGTCCCCTTGCAGAAAACCGTGTCCAGTTTCCTGGAGTCCAAGTTGAGGACGGCCGACAGCGCGGAGAGGGACAACGCCACGGCCGCTGGACAGCTCCCCGACAGCAGGCGCAGGCGGCCTCTGTCCAAGGTGCTGAATCTGGGGCTCAGCAAGGCGAGCCGCAAATCCAACCAGGTGGTGGTGGAGATCGGGGAAAAGGTGGTCCGGACGGGCTGCGGTGGACTTACAGCTGACGAGGACGCCCCACCGGTCATCCTGGAGATGGACCTCACTAGGATGTTGCAGTGGTGGCTGGGCGCCGAAGGGGGCCGGCTACGGGTCCGGCTCATGCCCGAGAGGAGAGCGCAAATaccagggagagaggagaagtaCTCCGCTGCGATCAGAGCGGCAGATGCCCGCCTCTTTTTGCAGATCACCTCCCGAGTAACATTTGAGAAATAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004072 True 747 mRNA 0.59 2 31319595 31320594

Neighbor

gene id symbol gene type direction distance location
AMCG00004070 NA coding downstream 228288 31076913 ~ 31091307 (-)
AMCG00004069 NA coding downstream 243922 31067311 ~ 31075673 (-)
AMCG00004068 NA coding downstream 297430 31013145 ~ 31022165 (-)
AMCG00004063 eprs,LOC107679779,LOC107732550,LOC107662594 coding downstream 363709 30950855 ~ 30955886 (-)
AMCG00004062 NA coding downstream 373605 30940156 ~ 30945990 (-)
AMCG00004074 NA coding upstream 217314 31537908 ~ 31539407 (-)
AMCG00004073 lrfn2,LOC106597048,LOC106582474 coding upstream 238089 31558683 ~ 31568015 (-)
AMCG00004077 supt7l,LOC107656753,LOC107726086,LOC107553729,LOC107737450,LOC107697525 coding upstream 1010732 32331326 ~ 32333781 (-)
AMCG00004076 NA coding upstream 1029359 32349953 ~ 32363126 (-)
AMCG00004091 daam2 coding upstream 1292502 32613096 ~ 32650701 (-)
G5432 NA non-coding downstream 329495 30988872 ~ 30990100 (-)
G5393 NA non-coding downstream 360481 30890186 ~ 30959114 (-)
G5387 NA non-coding downstream 473294 30843678 ~ 30846301 (-)
G5333 NA non-coding downstream 506012 30813295 ~ 30813583 (-)
G5330 NA non-coding downstream 517020 30800763 ~ 30802575 (-)
G5463 LOC108443926,LOC105894840 non-coding upstream 49406 31370000 ~ 31371409 (-)
G5465 NA non-coding upstream 65990 31386584 ~ 31387033 (-)
G5467 NA non-coding upstream 213353 31533947 ~ 31534379 (-)
G5476 NA non-coding upstream 350769 31671363 ~ 31671579 (-)
G5483 NA non-coding upstream 465740 31786334 ~ 31786944 (-)
AMCG00004060 NA other downstream 346099 30969679 ~ 30973496 (-)
AMCG00004052 NA other downstream 424771 30813781 ~ 30894824 (-)
AMCG00004041 NA other downstream 1043368 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 1099460 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 1990480 29324741 ~ 29329115 (-)
G5502 NA other upstream 988886 32309480 ~ 32309910 (-)
G5540 NA other upstream 1087208 32407802 ~ 32426563 (-)
G5566 NA other upstream 1273033 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 2245492 33566086 ~ 33567325 (-)
AMCG00004116 NA other upstream 2554847 33875441 ~ 33918321 (-)

Expression


Co-expression Network