AMCG00004073 (lrfn2,LOC106597048,LOC106582474)


Basic Information

Item Value
gene id AMCG00004073
gene name lrfn2,LOC106597048,LOC106582474
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 31558683 ~ 31568015 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004073
ATGGACAAAGTGTTCTGCAGCCTCCTGATTCTGGGATCCGCAGTGATGATGGCCCATGCATGCCCAAAATACTGTGTCTGCCAGAACCTCTCTGAGTCGTTGGGCACACTCTGTCCATCCAAAGGCCTCCTGTTTGTGCCTCCAGACATTGACCGCCGGACTGTGGAGCTTCGGCTCGGTGGCAACTTCATCATCCGGGTCACCCAGCAGGACTTTGCCAATATGACAGGGCTGGTGGACCTTACGCTGTCCCGCAACACCATCAGCTCCATCCAGCCCTTCTCCTTCATCGACCTGGAGACGCTGCGCTCCCTGCACCTTGACAGCAACCGTCTGACAGAGATAGGTGCGGATGACCTCCGCGGCCTCATCAACCTCCAACACCTCATCCTCAACAACAACCAGCTCAACTGGATCTCTGATGAGGCATTTGAGGACTCCCTGGCAACCCTGGAAGACGTAGACCTCTCCTACAACAACTTGCGGGGGGTGCCCTGGGACTCCATCCGCAAGATGGTCAACCTGCATCAGCTCAGCCTGGACCACAACCTCATCGATTATATCGTAGAGGGCACCTTCACTGATCTGCAGAAACTGGCTAGGCTGGACCTCACCTCCAACCGGCTTCAGAAGCTGCCACCAGACCCCATCTTCGCCCGCTCCCAGAACAATGTGGTGCTCACCACTCCATATGCCCCTCCACTGGCACTCAGCTTTGGAGGCAACCCCTTGCACTGCAATTGTGAGGTGTTGTGGCTGCGAAGGCTAGACAGAGAGGATGACATGGAGACTTGTGCTTCCCCTCCCAGCCTGAAGGGTCGATATTTCTGGTACATCAAGGAGGAGGAGTTTGTCTGCGAGCCTCCTCTCATCACCCAGCACACCCACAAGTTGCTGGTGCTGGAGGGTCAAACTGCCAGCCTGAAGTGCAAAGCCATTGGTGACCCAATGCCCATCATTCACTGGGTTGCCCCTGATGATCGCTTGATCGGTAATTCTTCCCGGGCGGTCGTCTATGACAACGGCACTCTAGACATTATGATAACCACCTCCAAGGACTACGGGACCTTCACCTGCATCGCAGCCAACGCAGCTGGAGAGTCCACTGCTTCCATAGAACTCTCCATCATCCAGCTCCCCCACCTCAGCAATGGTACCGGCCGCACCTCCCAACCAAAGTCCAGGCTCTCTGACATCACCAGCTCAACCAAGACTAGTAAAGGGGAAACAAAGAGCCCACCTGAGAGGGTGGTGTCAGTGTCAGAGGTGACCGCAGTCTCTGCCCTGGTCAAATGGTCGGTGAGCAAAGCAGCGCCCAAGGTGAAGATGTACCAGCTCCAGTATAACTGCTCTGATGATGAAGTGCTGATTTACAGGATGATCCCGGCATCTAGCAAAGCCTTTCTAGTGACCAACCTGGTGTCAGGAGTCCAGTATGACCTGTGTGTCCTGGCCATTTGGGATGACACCGCCACTACCTTGACTGCCACCAATGTGGTGGGCTGTGTGCAGTTCATCACCAGGGAGGACTATCCTCAGTGCCAGTCATTGCACAGCCAGTTCTTGGGTGGAACCATGATCCTGGTCATCGGTGGCATCATTGTAGCCACGTTGCTGGTCTTCATTGTCATCCTGATGGTCAGGTACAAAGTCTGCAGCAGCGCAAACTCAGGAAAGCTGCCCAATGTCAGCAACACTTACTCACAGACTAACGGGGGTCACACTGTCCACAATGGGGTGCTGCCCCAGGTGAACCCCAAAGTTGTAGTGCGGGATGAACTGATGGAGTTTAACTGTGGCTCTTTGCAGAGTAgcctgtcctcctcctccagctcgcTGGCCAGCAGGGACTGCGACGACTACAGCCTGCACAGCGACAAGAGCACTCTGTCCAACAAGTGGAGGCCTGTCACCTCCAGGTCACGGCCCAACCTGGACCACCTCCTGGGCGCCTTTGCCTCTCTGGAACTGAGGGCCCAGAAAAGAGAGCCGGGACCCTCAGAGTCAGGGGCCTCCACACTCGCCCCCCACTCTGACAAGGAGCCCCTGCTGGGGCGAGGGGACTCCAAGCTCAAAAGCCTTCTCATGTTACCTCTGGAGAGCAAGCCCAAGCGGAGCCACTCCTTCGACATGGGGGACTTTGCCACCACACAGTGCTGCAGCTACCCCAAAAAGATCACTAACATCTGGACTAAGAGGAGCCTCTCGGTCAATGGGATGCTCCTACAGTATGATGAGGGAGACCTAGAGGGGAGCAAAGCAAACTACGAGAGCTCTGAGTGGGTGATGGAGAGCACTGTTTAA

Function

symbol description
lrfn2 Predicted to be involved in modulation of chemical synaptic transmission and regulation of postsynapse organization. Predicted to be located in plasma membrane. Predicted to be active in Schaffer collateral - CA1 synapse and cell surface. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: leucine-rich repeat and fibronectin type-III domain-containing protein 2

GO: NA

KEGG:

id description
K16355 LRFN2, SALM1; leucine-rich repeat and fibronectin type-III domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004073 True 2304 mRNA 0.56 2 31558683 31568015

Neighbor

gene id symbol gene type direction distance location
AMCG00004074 NA coding downstream 19276 31537908 ~ 31539407 (-)
AMCG00004072 NA coding downstream 238089 31319595 ~ 31320594 (-)
AMCG00004070 NA coding downstream 467376 31076913 ~ 31091307 (-)
AMCG00004069 NA coding downstream 483010 31067311 ~ 31075673 (-)
AMCG00004068 NA coding downstream 536518 31013145 ~ 31022165 (-)
AMCG00004077 supt7l,LOC107656753,LOC107726086,LOC107553729,LOC107737450,LOC107697525 coding upstream 763311 32331326 ~ 32333781 (-)
AMCG00004076 NA coding upstream 781938 32349953 ~ 32363126 (-)
AMCG00004091 daam2 coding upstream 1045081 32613096 ~ 32650701 (-)
AMCG00004090 daam2 coding upstream 1095649 32663664 ~ 32671871 (-)
AMCG00004094 NA coding upstream 1395025 32963040 ~ 32974811 (-)
G5467 NA non-coding downstream 24304 31533947 ~ 31534379 (-)
G5465 NA non-coding downstream 171650 31386584 ~ 31387033 (-)
G5463 LOC108443926,LOC105894840 non-coding downstream 187274 31370000 ~ 31371409 (-)
G5432 NA non-coding downstream 568583 30988872 ~ 30990100 (-)
G5393 NA non-coding downstream 599569 30890186 ~ 30959114 (-)
G5476 NA non-coding upstream 103348 31671363 ~ 31671579 (-)
G5483 NA non-coding upstream 218319 31786334 ~ 31786944 (-)
G5491 NA non-coding upstream 460938 32028953 ~ 32029406 (-)
G5494 NA non-coding upstream 623305 32191320 ~ 32191542 (-)
G5500 NA non-coding upstream 700690 32268705 ~ 32269226 (-)
AMCG00004060 NA other downstream 585187 30969679 ~ 30973496 (-)
AMCG00004052 NA other downstream 663859 30813781 ~ 30894824 (-)
AMCG00004041 NA other downstream 1282456 30273806 ~ 30276227 (-)
AMCG00004038 LOC105015767 other downstream 1338548 30184618 ~ 30220135 (-)
AMCG00004006 NA other downstream 2229568 29324741 ~ 29329115 (-)
G5502 NA other upstream 741465 32309480 ~ 32309910 (-)
G5540 NA other upstream 839787 32407802 ~ 32426563 (-)
G5566 NA other upstream 1025612 32593627 ~ 32596407 (-)
AMCG00004102 NA other upstream 1998071 33566086 ~ 33567325 (-)
AMCG00004116 NA other upstream 2307426 33875441 ~ 33918321 (-)

Expression


Co-expression Network