AMCG00004075


Basic Information

Item Value
gene id AMCG00004075
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32335392 ~ 32346595 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004075
CTCTTCTGATTCCATAGCGGAGGGGAAGCAATTTAACGTGGTACCAAAAAGAAACATGGCAGAGTCAGCAAGTACAATAGCAGCGGAGAAACAGAGTAATGAGAGAATTGACATCGAAATGAGTGCAGAGGAAGAAGGAGTACAGCAGGAAAAGGGGGAGGTGGTTCTGAAGGAAGGAGgggaaaataatgaaactgcAGACACCGAAGATCCCTTTAAGAAACCGGCTATATTTGCCGTGCCGTCGCTGCTAAGCCGGAGAGCAGGTGCCCCGGTGTCCAGCGGGGCGAAACACACAGCCGCTACACCAGGCGGCTCTAAGGATGCGATCAGTTGCGCTAAATTTTTGAAGTCCGAGAACACAGAAATCGAGAAGGCGGTTCAGGAATCCAAAGAGAATGGTAATACCGGTTCTTTGGAAAGCAGTAAGGATAGGGCAGCCAAAGAGAAATGCCCCCAGGAAGCGGCAGCGGTGGAAAATGAGCCCGTGGTGGGAGTGACGAGCAGCAGCACAAGTGTCAAATCTGTCGCGGCATCCAGCGCTCAGGCCTCCAAACCCAGACTTCCTGCCAAAGCCCCGGACCCCATGTTTAAATCCTTCCCACCCTTGCCATACACAGAGCCTCTGTGGGGCGGCCTTGCGGAGACCTGCTACTCCTTTGAGATCCTGAAAAACGGGGCGATACTGGATACCGTGCCGCTGACCGAGAGGAGTTTTTTCGTGATCGGACGGTTACCGAACTGCGACGTGTCTCTGGAGCACCCCTCCATCTCTCGGTATCACGCCGTGGTGCAGTACCGACAGCGCGCCGGGGATgcggcggaggaggaggaggcggtggTCGGGGAGCAGAGGGGCTTCTATGTGTTCGACCTGGGCAGCACCCACGGCACCTTTGTGAACAAAAACAGGATCCCACCTAAAACCTACATAAGGCTGAGAGTGGGGCATGTGCTGAAGTTCGGGGGAAGTACTAGGCTGTTCATCCTGCAGGGGCCAGAATCTGATGCGGAGGCAGAGTCCGAGCTGTCCATCACTGAGCTGAAGGAGCTGAGCAAGAAGAGGCAGGCAGAGCTGGAGAAGAGGATGATGGGCGAAGGCTCCgatgaggagaaggaggaagaagaggaggggCAGAAGGGCAGGAAGGAGAAGAGCTCCGGCGAAGAGGCAGGCTGCTCCTGGGGAATGGGAGAGGATGCTCTGCCAGAGGAGGATGATAATGAGGAGAACCCCTTTGCCATGGAGTTCCAGGAGGACCAGGAAGCCTTCTACCTGAAGGACCCCAAGAAGGCACTGCAGGGCTTCTTTGACAGGGAAGGAGAGGAGCTGGAGTACGAGTATGATGACAAAGGCCATGGCACCTGGACCTGCAGAGTCTGTCTCCCAGTGGACGATGCAGTGGGGAAGCAGCTGGTGGCCGAGGTGACCCacactggaaagaaaaaggagGCCGCCATACAGTGTGCTCTGGAGGCCTGTCGCATCCTGGAGGCCCGGGGGCTCCTGCGCCAGGAGGCAGTGTCTCGCAAGCGGAGGAAGAAGAATTGGGAGGATGAGGATTTCTACGACAGTGATGATGACACCTTCCTGGACCGCACGGGCGTAGTGGAGAAGAAGAGGACGGACCGCATGAAGAAGGCCGGCAAGATTGAGGAGAAGCCGGACACCTATGAGTCGCTGGTGGCTAAGCTGTCCAAGCTGGAGAAGGAGCTGGCTGAGACCGAGCAGAAACTCAGCACTTCAGGGAAAACTGGAGCGCAGGCCTCCTCAGAGGACCCCCTGGAAGTGTTCATGAGCGCCGTGCGGAGCGCATGTCTCCACGTCCGCATGTCAGAGCTGCGTAAGGAGGAGCAGCGGCTGCGCAGACTGGTGGAGATCACGCGGCCCACCCAGCTCCCCTCACTGCAGCTGGGGGCCAGGACTCAGtccacagagacagacaagcCCAAGAAACTGTCTTTGCCCTTGTTTGGAGCCATGAAAGGGGGCAGCAAGTTCAGGCTGAAAACTGGCACAATAGGGCGCCTGCCCCCGAAGCGTGCAGACCTGCCCCCGGAGCTCTTCAATATGAAGGAGCTGTCCTCGACGGGGGAggtagaggaagaggaggaggaggaggaggaagcagctgcaaggacaaaggacttgcagacagacagactggagCCAGAGGAAACCAGCCAAGCACTGCAGGGAGACGATACGCCCAAGACACACAGCACTGTGGgGAGCAGCTCCGGTGATGGGCACACAGCTATGGCAGAGCTGAGGTCCGACACGACGGAAGGAGAGGTGCCCCCCCCTCAAGCTGTAGCCTCCTGTCCTGACACCACACCTGCGGCGCCCAGGGAGACTCACAGCAACAGAGCGACGGAGACCAAAACATCCCACAAGAAGAAGATGATGCGTGGCCCCAGCAGACCACCCACTGCCCTCCTTGCTGGCCAGTACCCTGAGGATGACCCCAACTACAGCGTCTGGGTGCCACCTTCAGGTCAGACCGGAGATGGCCGCACTCACCTCAACGAAAAGTACGGCTACTGAGCTCCGAGCCACCGACCAAACTGGGCATCACTTGCTGTGAACTCAGCACTGAATACAGAGGGGGACGGGACGGGACACTAGCACTTACTCATTTTCTTGATGCATTTTCCTCCGGTCACAGTTTTCCCCACCATCTGCTTGGGAGAACTAACACTCTGTGGGAGTTTGCTTCCTCGTAGTTGTTCCCAAAGGCCAGCAGCGGGAGCAGGCTTCTTCAGTCAGTGTCTATAATTAGGACAGGCTCTGTTACAGCACTACGTGGAGTCAATGACTGACACCGACTCCTCTCTGCACCAAAGCCTACTAGAAGAGCCTGTGATGAtgactgtatgtatgtagatgtgtgtgtgtgcatgctgtTGTCTTCCCAGACCATCAGAGCCTAAGCTTCGCTGGACATAAGGAAGTTCCATATGCATTGTGACTCGCAAAAGCCCCCATTACTGGGCCTCCAAATACCTCCCCAGGTAGCGTTCGGTCTGCCAGATAACAAGCGTAACAGGATCCCTGCACTGGCTTTCTTTACTTAAAAAACTGGAAAATCAATGTATCAATGTATCTGTAACAATGCATCAGTTTCTctgctttgaaattaaatatatataccttgTGTATTTATACAACTTGCTAAAGATGTTGGACCGATGGAGTTTGAAAAAGAAGTCTTCTGTTCAGAGTAGGCAGTGTCAACCCTCAGCTCTTCTGGGGACAGAAGGTGAGGGGGATCTCGTTCTCCATTCCCATGGATGCTCTCATTGTTGCCTGCCAGAAATGCAACGAATTGCATGGATGTTTTGAGTATCGTCCATTTGATCTGATGTGGAACAGAAAGAGGCTGCAGGCTGATTATATGCAGTTAAGAAAGAGCTGAGCTGATTTTTGATTGACGGGCTTGGTTCTATTTGTTCAGGTACCCTAAGTTGCAAAAgtgattttccttttattttttccaccccTTACAACATCTGCTCTTTCTGGTATTTGAGATGTGTGGGGTGAGAGCCGAGAGCACAGTTAGGTTAGCCCACCATATTATCCAAACCAATATGTTGGAAGATGCATcttttacaatgtaaatatctTGTAGACTGATATCTTAGAAGTCAATCAGGTTGttattgctgtatattttgttactgatgttcatttaataaaaaagaaaatctgtataTGTCAATACAATA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004075 True 3732 mRNA 0.53 14 32335392 32346595

Neighbor

gene id symbol gene type direction distance location
AMCG00004078 NA coding upstream 6220 32305491 ~ 32329172 (+)
AMCG00004071 LOC105894840,LOC108443926 coding upstream 964234 31370382 ~ 31371158 (+)
AMCG00004066 NA coding upstream 1272683 31047145 ~ 31062709 (+)
AMCG00004067 NA coding upstream 1295655 31030418 ~ 31039737 (+)
AMCG00004065 NA coding upstream 1345292 30974976 ~ 30990100 (+)
AMCG00004080 bre coding downstream 81864 32428459 ~ 32428913 (+)
AMCG00004083 bre,LOC104968080 coding downstream 102812 32449407 ~ 32455846 (+)
AMCG00004081 bre coding downstream 152878 32499473 ~ 32529839 (+)
AMCG00004082 NA coding downstream 212384 32558979 ~ 32559365 (+)
AMCG00004086 NA coding downstream 224984 32571579 ~ 32582699 (+)
G5501 NA non-coding upstream 25480 32309505 ~ 32309912 (+)
G5499 NA non-coding upstream 66321 32268748 ~ 32269071 (+)
G5493 NA non-coding upstream 143850 32191320 ~ 32191542 (+)
G5490 NA non-coding upstream 306091 32029004 ~ 32029301 (+)
G5482 NA non-coding upstream 548509 31786334 ~ 31786883 (+)
G5522 NA non-coding downstream 1795 32348390 ~ 32350103 (+)
G5527 NA non-coding downstream 36814 32383409 ~ 32383679 (+)
G5529 NA non-coding downstream 37840 32384435 ~ 32387535 (+)
G5569 NA non-coding downstream 265238 32611833 ~ 32612051 (+)
G5662 NA non-coding downstream 1091733 33438328 ~ 33445420 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 1440565 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2028217 30296867 ~ 30307175 (+)
G5245 NA other upstream 2063868 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 2794034 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 3651411 28640174 ~ 28683981 (+)
AMCG00004079 NA other downstream 53810 32400405 ~ 32402383 (+)
G5642 NA other downstream 783525 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 2506268 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 3405855 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 3680684 36027279 ~ 36045282 (+)

Expression


Co-expression Network